EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0018472 (Gene tree)
Gene ID: -
Gene Symbol: Rab5c
Alias: AI326010|Rab5C|Rabl
Full Name: RAB5C%2C member RAS oncogene family
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 26122 bases
Position: chr11:103388575-103414696
Accession: 105306
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0031938	MMR_HSR1	PF01926.23	0.00022	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0031940	-	412	-	MGP_CASTEiJ_P0031940	83 (aa)	-	-
MGP_CASTEiJ_T0031941	-	441	-	MGP_CASTEiJ_P0031941	34 (aa)	-	-
MGP_CASTEiJ_T0031939	-	1967	-	MGP_CASTEiJ_P0031939	234 (aa)	-	-
MGP_CASTEiJ_T0031938	-	1915	XM_006532586	MGP_CASTEiJ_P0031938	216 (aa)	XP_006532649	P35278

Gene Model

Click here to download MGP_CASTEiJ_G0018472's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0018472's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0018472	Rab5c	89	35.784	MGP_CASTEiJ_G0019160	Rab15	95	35.784
MGP_CASTEiJ_G0018472	Rab5c	90	38.974	MGP_CASTEiJ_G0027193	Rab2a	92	38.974
MGP_CASTEiJ_G0018472	Rab5c	55	31.707	MGP_CASTEiJ_G0015866	Arl8a	62	31.707
MGP_CASTEiJ_G0018472	Rab5c	55	31.967	MGP_CASTEiJ_G0030189	Arl8b	62	31.967
MGP_CASTEiJ_G0018472	Rab5c	97	86.124	MGP_CASTEiJ_G0017200	Rab5b	97	86.124
MGP_CASTEiJ_G0018472	Rab5c	75	48.447	MGP_CASTEiJ_G0022763	Rab11b	74	48.447
MGP_CASTEiJ_G0018472	Rab5c	89	39.691	MGP_CASTEiJ_G0020554	Rab2b	90	39.691
MGP_CASTEiJ_G0018472	Rab5c	91	46.939	MGP_CASTEiJ_G0023184	Rab31	98	46.939
MGP_CASTEiJ_G0018472	Rab5c	81	33.702	MGP_CASTEiJ_G0032241	Hras	94	33.702
MGP_CASTEiJ_G0018472	Rab5c	73	35.625	MGP_CASTEiJ_G0016681	Rab36	60	35.625
MGP_CASTEiJ_G0018472	Rab5c	86	39.785	MGP_CASTEiJ_G0024846	Rab14	89	40.741
MGP_CASTEiJ_G0018472	Rab5c	81	31.250	MGP_CASTEiJ_G0028465	Rheb	93	31.250
MGP_CASTEiJ_G0018472	Rab5c	71	35.948	MGP_CASTEiJ_G0021498	Rabl2	67	35.948
MGP_CASTEiJ_G0018472	Rab5c	89	43.590	MGP_CASTEiJ_G0017380	Rab1a	95	43.590
MGP_CASTEiJ_G0018472	Rab5c	89	34.848	MGP_CASTEiJ_G0035224	Rab9	97	34.848
MGP_CASTEiJ_G0018472	Rab5c	78	32.544	MGP_CASTEiJ_G0030551	Kras	98	30.102
MGP_CASTEiJ_G0018472	Rab5c	81	35.227	MGP_CASTEiJ_G0015254	Rab23	74	35.227
MGP_CASTEiJ_G0018472	Rab5c	90	47.423	MGP_CASTEiJ_G0026136	Rab22a	98	47.423
MGP_CASTEiJ_G0018472	Rab5c	89	41.089	MGP_CASTEiJ_G0026561	Rab25	93	41.089
MGP_CASTEiJ_G0018472	Rab5c	86	38.806	MGP_CASTEiJ_G0023193	Rab12	75	36.000
MGP_CASTEiJ_G0018472	Rab5c	94	41.379	MGP_CASTEiJ_G0034188	Rab6b	98	41.379
MGP_CASTEiJ_G0018472	Rab5c	90	41.262	MGP_CASTEiJ_G0033947	Rab11a	88	49.630
MGP_CASTEiJ_G0018472	Rab5c	77	42.442	MGP_CASTEiJ_G0030093	Rab7	90	49.296
MGP_CASTEiJ_G0018472	Rab5c	89	37.113	MGP_CASTEiJ_G0029079	Rab35	96	37.436
MGP_CASTEiJ_G0018472	Rab5c	89	44.330	MGP_CASTEiJ_G0023899	Rab1b	96	44.330
MGP_CASTEiJ_G0018472	Rab5c	75	36.585	MGP_CASTEiJ_G0034827	Rab39b	77	36.585
MGP_CASTEiJ_G0018472	Rab5c	89	35.859	MGP_CASTEiJ_G0035073	Rab9b	97	35.859
MGP_CASTEiJ_G0018472	Rab5c	78	42.012	MGP_CASTEiJ_G0031541	Rab30	83	42.012
MGP_CASTEiJ_G0018472	Rab5c	75	45.062	MGP_CASTEiJ_G0023338	Rab18	78	45.062
MGP_CASTEiJ_G0018472	Rab5c	98	40.845	MGP_CASTEiJ_G0018675	Rab37	95	40.845
MGP_CASTEiJ_G0018472	Rab5c	83	30.000	MGP_CASTEiJ_G0026847	Nras	99	33.333
MGP_CASTEiJ_G0018472	Rab5c	100	87.500	MGP_CASTEiJ_G0023094	Rab5a	100	87.500
MGP_CASTEiJ_G0018472	Rab5c	89	36.318	MGP_CASTEiJ_G0034658	Rab33a	85	36.318
MGP_CASTEiJ_G0018472	Rab5c	73	31.875	MGP_CASTEiJ_G0018075	Rab34	62	31.875
MGP_CASTEiJ_G0018472	Rab5c	93	37.379	MGP_CASTEiJ_G0026366	Rab33b	89	37.379