EuRBPDB

Description

Ensembl ID: MGP_CASTEiJ_G0019896 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpk
Alias: Hnrpk|Hnrpk {ECO:0000313|EMBL:AAH89328.1,GN ECO:0000313|MGI:MGI:99894}|KBBP|NOVA|hnRNPK
Full Name: heterogeneous nuclear ribonucleoprotein K
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 12465 bases
Position: chr13:57479970-57492434
Accession: 99894
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0036939	KH_1	PF00013.29	2.4e-43	1	3
MGP_CASTEiJ_P0036939	KH_1	PF00013.29	2.4e-43	2	3
MGP_CASTEiJ_P0036939	KH_1	PF00013.29	2.4e-43	3	3
MGP_CASTEiJ_P0036940	KH_1	PF00013.29	2.4e-43	1	3
MGP_CASTEiJ_P0036940	KH_1	PF00013.29	2.4e-43	2	3
MGP_CASTEiJ_P0036940	KH_1	PF00013.29	2.4e-43	3	3
MGP_CASTEiJ_P0036941	KH_1	PF00013.29	3e-43	1	3
MGP_CASTEiJ_P0036941	KH_1	PF00013.29	3e-43	2	3
MGP_CASTEiJ_P0036941	KH_1	PF00013.29	3e-43	3	3
MGP_CASTEiJ_P0036938	KH_1	PF00013.29	2.4e-33	1	2
MGP_CASTEiJ_P0036938	KH_1	PF00013.29	2.4e-33	2	2
MGP_CASTEiJ_P0036945	KH_1	PF00013.29	1.1e-23	1	2
MGP_CASTEiJ_P0036945	KH_1	PF00013.29	1.1e-23	2	2
MGP_CASTEiJ_P0036942	KH_1	PF00013.29	1.6e-23	1	2
MGP_CASTEiJ_P0036942	KH_1	PF00013.29	1.6e-23	2	2
MGP_CASTEiJ_P0036947	KH_1	PF00013.29	3e-23	1	2
MGP_CASTEiJ_P0036947	KH_1	PF00013.29	3e-23	2	2
MGP_CASTEiJ_P0036949	KH_1	PF00013.29	3.3e-09	1	1
MGP_CASTEiJ_P0036951	KH_1	PF00013.29	6.7e-09	1	1
MGP_CASTEiJ_P0036951	KH_2	PF07650.17	0.00011	1	1
MGP_CASTEiJ_P0036942	ROKNT	PF08067.11	3.1e-27	1	1
MGP_CASTEiJ_P0036951	ROKNT	PF08067.11	3.7e-27	1	1
MGP_CASTEiJ_P0036939	ROKNT	PF08067.11	7.9e-27	1	1
MGP_CASTEiJ_P0036940	ROKNT	PF08067.11	7.9e-27	1	1
MGP_CASTEiJ_P0036945	ROKNT	PF08067.11	1.9e-26	1	1
MGP_CASTEiJ_P0036941	ROKNT	PF08067.11	4.1e-26	1	1
MGP_CASTEiJ_P0036947	ROKNT	PF08067.11	1.9e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0036938	-	2420	XM_006517103	MGP_CASTEiJ_P0036938	395 (aa)	XP_006517166	P61979
MGP_CASTEiJ_T0036939	-	2401	-	MGP_CASTEiJ_P0036939	440 (aa)	-	-
MGP_CASTEiJ_T0036950	-	775	-	-	- (aa)	-	-
MGP_CASTEiJ_T0036951	-	1053	-	MGP_CASTEiJ_P0036951	97 (aa)	-	-
MGP_CASTEiJ_T0036949	-	476	-	MGP_CASTEiJ_P0036949	87 (aa)	-	-
MGP_CASTEiJ_T0036948	-	833	-	-	- (aa)	-	-
MGP_CASTEiJ_T0036945	-	900	-	MGP_CASTEiJ_P0036945	256 (aa)	-	-
MGP_CASTEiJ_T0036944	-	737	-	-	- (aa)	-	-
MGP_CASTEiJ_T0036947	-	676	-	MGP_CASTEiJ_P0036947	178 (aa)	-	-
MGP_CASTEiJ_T0036946	-	459	-	-	- (aa)	-	-
MGP_CASTEiJ_T0036941	-	1556	-	MGP_CASTEiJ_P0036941	464 (aa)	-	-
MGP_CASTEiJ_T0036940	-	2487	-	MGP_CASTEiJ_P0036940	440 (aa)	-	-
MGP_CASTEiJ_T0036943	-	522	-	-	- (aa)	-	-
MGP_CASTEiJ_T0036942	-	1004	-	MGP_CASTEiJ_P0036942	299 (aa)	-	-
MGP_CASTEiJ_T0036952	-	778	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0019896	Hnrnpk	78	31.724	MGP_CASTEiJ_G0030066	Pcbp1	85	42.857
MGP_CASTEiJ_G0019896	Hnrnpk	78	31.724	MGP_CASTEiJ_G0021674	Pcbp2	84	44.444
MGP_CASTEiJ_G0019896	Hnrnpk	78	32.414	MGP_CASTEiJ_G0034226	Pcbp4	86	33.728
MGP_CASTEiJ_G0019896	Hnrnpk	57	34.615	MGP_CASTEiJ_G0027142	Fubp1	53	34.615
MGP_CASTEiJ_G0019896	Hnrnpk	57	37.681	MGP_CASTEiJ_G0030795	-	54	37.681
MGP_CASTEiJ_G0019896	Hnrnpk	70	51.316	MGP_CASTEiJ_G0016721	Pcbp3	79	41.667
MGP_CASTEiJ_G0019896	Hnrnpk	56	39.062	MGP_CASTEiJ_G0019013	Nova1	56	39.062