EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0020659 (Gene tree)
Gene ID: -
Gene Symbol: Pspc1
Alias: 5730470C09Rik|AI327109|AI449052|PSP1|Psp1
Full Name: paraspeckle protein 1
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 61835 bases
Position: chr14:47576596-47638430
Accession: 1913895
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0039382	RRM_1	PF00076.22	3.6e-32	1	2
MGP_CASTEiJ_P0039382	RRM_1	PF00076.22	3.6e-32	2	2
MGP_CASTEiJ_P0039381	RRM_1	PF00076.22	5e-32	1	2
MGP_CASTEiJ_P0039381	RRM_1	PF00076.22	5e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0039384	-	601	-	MGP_CASTEiJ_P0039384	58 (aa)	-	-
MGP_CASTEiJ_T0039382	-	2863	-	MGP_CASTEiJ_P0039382	466 (aa)	-	-
MGP_CASTEiJ_T0039383	-	528	-	-	- (aa)	-	-
MGP_CASTEiJ_T0039381	-	2382	-	MGP_CASTEiJ_P0039381	523 (aa)	-	Q8R326

Gene Model

Click here to download MGP_CASTEiJ_G0020659's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0020659's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0020659	Pspc1	84	71.429	MGP_CASTEiJ_G0027919	Sfpq	55	65.891
MGP_CASTEiJ_G0020659	Pspc1	91	36.667	MGP_CASTEiJ_G0023879	Rbm4	80	33.036
MGP_CASTEiJ_G0020659	Pspc1	84	67.347	MGP_CASTEiJ_G0034925	-	80	66.230
MGP_CASTEiJ_G0020659	Pspc1	69	41.304	MGP_CASTEiJ_G0016816	Cirbp	68	34.247