EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0021054 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc1
Alias: PABP|Pabp1|PabpI|Pabpl1|ePAB
Full Name: poly(A) binding protein%2C cytoplasmic 1
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 16521 bases
Position: chr15:34979757-34996277
Accession: 1349722
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0040556	PABP	PF00658.18	9e-33	1	1
MGP_CASTEiJ_P0040555	PABP	PF00658.18	6.3e-32	1	1
MGP_CASTEiJ_P0040555	RRM_5	PF13893.6	4.3e-07	1	2
MGP_CASTEiJ_P0040555	RRM_5	PF13893.6	4.3e-07	2	2
MGP_CASTEiJ_P0040555	RRM_1	PF00076.22	3.2e-77	1	4
MGP_CASTEiJ_P0040555	RRM_1	PF00076.22	3.2e-77	2	4
MGP_CASTEiJ_P0040555	RRM_1	PF00076.22	3.2e-77	3	4
MGP_CASTEiJ_P0040555	RRM_1	PF00076.22	3.2e-77	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0040559	-	866	-	-	- (aa)	-	-
MGP_CASTEiJ_T0040558	-	725	-	-	- (aa)	-	-
MGP_CASTEiJ_T0040557	-	633	-	-	- (aa)	-	-
MGP_CASTEiJ_T0040556	-	593	-	MGP_CASTEiJ_P0040556	117 (aa)	-	-
MGP_CASTEiJ_T0040555	-	2441	XM_011245339	MGP_CASTEiJ_P0040555	573 (aa)	XP_011243641	P29341
MGP_CASTEiJ_T0040560	-	2760	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0021054's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0021054's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0021054	Pabpc1	56	63.291	MGP_CASTEiJ_G0035010	Pabpc5	96	63.158
MGP_CASTEiJ_G0021054	Pabpc1	99	76.724	MGP_CASTEiJ_G0023577	Pabpc2	100	60.972
MGP_CASTEiJ_G0021054	Pabpc1	84	81.373	MGP_CASTEiJ_G0027214	-	94	81.373
MGP_CASTEiJ_G0021054	Pabpc1	99	88.024	MGP_CASTEiJ_G0022384	Pabpc6	99	88.024
MGP_CASTEiJ_G0021054	Pabpc1	55	36.145	MGP_CASTEiJ_G0027708	Elavl4	88	36.145
MGP_CASTEiJ_G0021054	Pabpc1	98	88.571	MGP_CASTEiJ_G0027867	Pabpc4	100	95.035
MGP_CASTEiJ_G0021054	Pabpc1	98	53.492	MGP_CASTEiJ_G0026012	Pabpc1l	99	53.492
MGP_CASTEiJ_G0021054	Pabpc1	55	69.277	MGP_CASTEiJ_G0026358	Pabpc4l	97	69.277
MGP_CASTEiJ_G0021054	Pabpc1	55	31.469	MGP_CASTEiJ_G0024960	Rbms1	53	31.469
MGP_CASTEiJ_G0021054	Pabpc1	56	35.000	MGP_CASTEiJ_G0032110	Tial1	94	31.008
MGP_CASTEiJ_G0021054	Pabpc1	55	38.095	MGP_CASTEiJ_G0030063	Tia1	95	30.189
MGP_CASTEiJ_G0021054	Pabpc1	56	39.344	MGP_CASTEiJ_G0026760	Sf3b4	70	39.344
MGP_CASTEiJ_G0021054	Pabpc1	55	36.145	MGP_CASTEiJ_G0033478	Elavl3	92	36.145
MGP_CASTEiJ_G0021054	Pabpc1	55	37.349	MGP_CASTEiJ_G0027579	Elavl2	89	37.349