EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0021232 (Gene tree)
Gene ID: -
Gene Symbol: Puf60
Alias: 2410104I19Rik|2810454F19Rik|SIAHBP1
Full Name: poly-U binding splicing factor 60
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 11185 bases
Position: chr15:76181275-76192459
Accession: 1915209
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0041093	RRM_1	PF00076.22	5.1e-44	1	2
MGP_CASTEiJ_P0041093	RRM_1	PF00076.22	5.1e-44	2	2
MGP_CASTEiJ_P0041094	RRM_1	PF00076.22	5.9e-44	1	2
MGP_CASTEiJ_P0041094	RRM_1	PF00076.22	5.9e-44	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0041094	-	1912	-	MGP_CASTEiJ_P0041094	564 (aa)	-	-
MGP_CASTEiJ_T0041093	-	1861	XM_006521302	MGP_CASTEiJ_P0041093	547 (aa)	XP_006521365	Q3UEB3

Gene Model

Click here to download MGP_CASTEiJ_G0021232's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0021232's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0021232	Puf60	81	32.407	MGP_CASTEiJ_G0016890	Celf5	57	32.407
MGP_CASTEiJ_G0021232	Puf60	59	35.000	MGP_CASTEiJ_G0030650	U2af2	83	36.275