EuRBPDB

Description

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0045330	PABP	PF00658.18	1.4e-26	1	1
MGP_CASTEiJ_P0045330	RRM_5	PF13893.6	3.7e-07	1	1
MGP_CASTEiJ_P0045330	RRM_1	PF00076.22	2.1e-89	1	4
MGP_CASTEiJ_P0045330	RRM_1	PF00076.22	2.1e-89	2	4
MGP_CASTEiJ_P0045330	RRM_1	PF00076.22	2.1e-89	3	4
MGP_CASTEiJ_P0045330	RRM_1	PF00076.22	2.1e-89	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0045330	-	3203	-	MGP_CASTEiJ_P0045330	642 (aa)	-	Q9D4E6

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0022384	Pabpc6	97	56.894	MGP_CASTEiJ_G0026012	Pabpc1l	99	56.735
MGP_CASTEiJ_G0022384	Pabpc6	58	64.497	MGP_CASTEiJ_G0026358	Pabpc4l	98	64.497
MGP_CASTEiJ_G0022384	Pabpc6	99	69.829	MGP_CASTEiJ_G0023577	Pabpc2	99	69.829
MGP_CASTEiJ_G0022384	Pabpc6	51	34.211	MGP_CASTEiJ_G0024528	Celf2	57	34.211
MGP_CASTEiJ_G0022384	Pabpc6	61	39.062	MGP_CASTEiJ_G0033906	Celf6	73	39.062
MGP_CASTEiJ_G0022384	Pabpc6	60	34.091	MGP_CASTEiJ_G0034390	Rbms3	77	33.708
MGP_CASTEiJ_G0022384	Pabpc6	57	37.500	MGP_CASTEiJ_G0026707	Celf3	75	37.500
MGP_CASTEiJ_G0022384	Pabpc6	62	36.145	MGP_CASTEiJ_G0033478	Elavl3	92	36.145
MGP_CASTEiJ_G0022384	Pabpc6	60	32.955	MGP_CASTEiJ_G0024960	Rbms1	54	32.584
MGP_CASTEiJ_G0022384	Pabpc6	99	64.458	MGP_CASTEiJ_G0027867	Pabpc4	100	86.525
MGP_CASTEiJ_G0022384	Pabpc6	59	58.470	MGP_CASTEiJ_G0035010	Pabpc5	95	58.445
MGP_CASTEiJ_G0022384	Pabpc6	60	37.349	MGP_CASTEiJ_G0027579	Elavl2	90	37.349
MGP_CASTEiJ_G0022384	Pabpc6	86	50.691	MGP_CASTEiJ_G0027214	-	94	50.691
MGP_CASTEiJ_G0022384	Pabpc6	58	36.905	MGP_CASTEiJ_G0030063	Tia1	96	36.905
MGP_CASTEiJ_G0022384	Pabpc6	58	38.798	MGP_CASTEiJ_G0026760	Sf3b4	50	38.798
MGP_CASTEiJ_G0022384	Pabpc6	53	35.526	MGP_CASTEiJ_G0025323	Celf1	52	35.526
MGP_CASTEiJ_G0022384	Pabpc6	60	32.468	MGP_CASTEiJ_G0027708	Elavl4	88	32.468
MGP_CASTEiJ_G0022384	Pabpc6	57	34.667	MGP_CASTEiJ_G0029104	Rbm19	63	34.667
MGP_CASTEiJ_G0022384	Pabpc6	99	88.024	MGP_CASTEiJ_G0021054	Pabpc1	99	88.024
MGP_CASTEiJ_G0022384	Pabpc6	56	34.014	MGP_CASTEiJ_G0032110	Tial1	94	31.783
MGP_CASTEiJ_G0022384	Pabpc6	62	36.842	MGP_CASTEiJ_G0023416	Celf4	62	36.842