EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0022718 (Gene tree)
Gene ID: -
Gene Symbol: U2af1
Alias: 2010107D16Rik|35kDa
Full Name: U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 13577 bases
Position: chr17:31100688-31114264
Accession: 98884
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0046537	zf-CCCH	PF00642.24	5e-12	1	2
MGP_CASTEiJ_P0046537	zf-CCCH	PF00642.24	5e-12	2	2
MGP_CASTEiJ_P0046538	zf-CCCH	PF00642.24	5.1e-12	1	2
MGP_CASTEiJ_P0046538	zf-CCCH	PF00642.24	5.1e-12	2	2
MGP_CASTEiJ_P0046538	RRM_1	PF00076.22	3.2e-06	1	1
MGP_CASTEiJ_P0046537	RRM_1	PF00076.22	3.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0046538	-	857	-	MGP_CASTEiJ_P0046538	250 (aa)	-	-
MGP_CASTEiJ_T0046537	-	857	XM_006523472	MGP_CASTEiJ_P0046537	250 (aa)	XP_006523535	Q9D883

Gene Model

Click here to download MGP_CASTEiJ_G0022718's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0022718's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0022718	U2af1	80	86.935	MGP_CASTEiJ_G0031066	-	100	90.385