EuRBPDB

Description

Ensembl ID: MGP_CASTEiJ_G0022828 (Gene tree)
Gene ID: -
Gene Symbol: Lsm2
Alias: D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|Sm-X5GN|SmX5|snRNP
Full Name: LSM2 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 4030 bases
Position: chr17:34823093-34827122
Accession: 90676
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0047022	LSM	PF01423.22	1.2e-16	1	1
MGP_CASTEiJ_P0047025	LSM	PF01423.22	2.7e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0047030	-	528	-	-	- (aa)	-	-
MGP_CASTEiJ_T0047031	-	1066	-	-	- (aa)	-	-
MGP_CASTEiJ_T0047028	-	870	-	MGP_CASTEiJ_P0047028	85 (aa)	-	-
MGP_CASTEiJ_T0047029	-	691	-	-	- (aa)	-	-
MGP_CASTEiJ_T0047026	-	687	-	-	- (aa)	-	-
MGP_CASTEiJ_T0047027	-	653	-	-	- (aa)	-	-
MGP_CASTEiJ_T0047024	-	368	-	-	- (aa)	-	-
MGP_CASTEiJ_T0047025	-	873	-	MGP_CASTEiJ_P0047025	131 (aa)	-	-
MGP_CASTEiJ_T0047022	-	840	-	MGP_CASTEiJ_P0047022	95 (aa)	-	-
MGP_CASTEiJ_T0047023	-	521	-	-	- (aa)	-	-
MGP_CASTEiJ_T0047021	-	1586	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0022828	Lsm2	77	31.507	MGP_CASTEiJ_G0027899	Lsm10	75	31.507
MGP_CASTEiJ_G0022828	Lsm2	92	34.831	MGP_CASTEiJ_G0032732	Lsm4	70	35.644