EuRBPDB

Description

Ensembl ID: MGP_CASTEiJ_G0022856 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39b
Alias: 0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh|Uap56
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 14853 bases
Position: chr17:35106495-35121347
Accession: 99240
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0047155	ResIII	PF04851.15	9.2e-08	1	1
MGP_CASTEiJ_P0047154	ResIII	PF04851.15	2.4e-07	1	1
MGP_CASTEiJ_P0047157	ResIII	PF04851.15	2.4e-07	1	1
MGP_CASTEiJ_P0047159	ResIII	PF04851.15	2.4e-07	1	1
MGP_CASTEiJ_P0047154	DEAD	PF00270.29	1.2e-38	1	1
MGP_CASTEiJ_P0047157	DEAD	PF00270.29	1.2e-38	1	1
MGP_CASTEiJ_P0047159	DEAD	PF00270.29	1.2e-38	1	1
MGP_CASTEiJ_P0047155	DEAD	PF00270.29	4.1e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0047158	-	741	-	-	- (aa)	-	-
MGP_CASTEiJ_T0047159	-	1762	-	MGP_CASTEiJ_P0047159	428 (aa)	-	-
MGP_CASTEiJ_T0047156	-	1706	-	-	- (aa)	-	-
MGP_CASTEiJ_T0047157	-	2842	-	MGP_CASTEiJ_P0047157	428 (aa)	-	-
MGP_CASTEiJ_T0047154	-	1731	-	MGP_CASTEiJ_P0047154	428 (aa)	-	Q9Z1N5
MGP_CASTEiJ_T0047155	-	759	-	MGP_CASTEiJ_P0047155	148 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0022856	Ddx39b	99	37.415	MGP_CASTEiJ_G0018781	Eif4a3	88	36.757
MGP_CASTEiJ_G0022856	Ddx39b	70	34.286	MGP_CASTEiJ_G0018908	Ddx1	54	36.471
MGP_CASTEiJ_G0022856	Ddx39b	99	36.667	MGP_CASTEiJ_G0032713	Ddx49	97	33.046
MGP_CASTEiJ_G0022856	Ddx39b	99	36.486	MGP_CASTEiJ_G0030485	Ddx47	90	31.926
MGP_CASTEiJ_G0022856	Ddx39b	100	90.654	MGP_CASTEiJ_G0032855	Ddx39	100	90.654
MGP_CASTEiJ_G0022856	Ddx39b	99	40.816	MGP_CASTEiJ_G0021938	Eif4a2	90	38.919
MGP_CASTEiJ_G0022856	Ddx39b	99	31.792	MGP_CASTEiJ_G0016265	D1Pas1	57	30.105
MGP_CASTEiJ_G0022856	Ddx39b	99	34.014	MGP_CASTEiJ_G0033719	Ddx6	79	35.659
MGP_CASTEiJ_G0022856	Ddx39b	99	36.424	MGP_CASTEiJ_G0026082	Ddx27	54	31.655
MGP_CASTEiJ_G0022856	Ddx39b	99	31.293	MGP_CASTEiJ_G0015890	Ddx59	63	30.123
MGP_CASTEiJ_G0022856	Ddx39b	99	35.135	MGP_CASTEiJ_G0033540	Ddx25	82	31.605
MGP_CASTEiJ_G0022856	Ddx39b	64	38.298	MGP_CASTEiJ_G0033144	-	59	34.459
MGP_CASTEiJ_G0022856	Ddx39b	99	35.032	MGP_CASTEiJ_G0033143	Ddx19a	82	32.108
MGP_CASTEiJ_G0022856	Ddx39b	99	31.792	MGP_CASTEiJ_G0034550	Ddx3x	53	30.726