EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0023094 (Gene tree)
Gene ID: -
Gene Symbol: Rab5a
Alias: 2410015H04Rik|AI663973|AU021172|nnyRab5a
Full Name: RAB5A%2C member RAS oncogene family
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 27428 bases
Position: chr17:55148579-55176006
Accession: 105926
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0047940	MMR_HSR1	PF01926.23	0.00016	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0047940	-	1747	-	MGP_CASTEiJ_P0047940	215 (aa)	-	Q9CQD1

Gene Model

Click here to download MGP_CASTEiJ_G0023094's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0023094's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0023094	Rab5a	74	40.881	MGP_CASTEiJ_G0019160	Rab15	75	40.881
MGP_CASTEiJ_G0023094	Rab5a	81	40.782	MGP_CASTEiJ_G0030093	Rab7	99	47.436
MGP_CASTEiJ_G0023094	Rab5a	100	81.860	MGP_CASTEiJ_G0017200	Rab5b	100	81.860
MGP_CASTEiJ_G0023094	Rab5a	91	41.951	MGP_CASTEiJ_G0033947	Rab11a	88	48.148
MGP_CASTEiJ_G0023094	Rab5a	73	33.121	MGP_CASTEiJ_G0028465	Rheb	85	33.121
MGP_CASTEiJ_G0023094	Rab5a	81	43.678	MGP_CASTEiJ_G0031541	Rab30	86	43.678
MGP_CASTEiJ_G0023094	Rab5a	91	30.244	MGP_CASTEiJ_G0016681	Rab36	77	30.244
MGP_CASTEiJ_G0023094	Rab5a	90	41.667	MGP_CASTEiJ_G0022763	Rab11b	94	41.667
MGP_CASTEiJ_G0023094	Rab5a	90	34.328	MGP_CASTEiJ_G0035224	Rab9	97	34.328
MGP_CASTEiJ_G0023094	Rab5a	74	35.928	MGP_CASTEiJ_G0021498	Rabl2	72	35.928
MGP_CASTEiJ_G0023094	Rab5a	76	32.727	MGP_CASTEiJ_G0026847	Nras	99	34.667
MGP_CASTEiJ_G0023094	Rab5a	75	41.566	MGP_CASTEiJ_G0034658	Rab33a	70	41.566
MGP_CASTEiJ_G0023094	Rab5a	56	33.065	MGP_CASTEiJ_G0030189	Arl8b	63	33.065
MGP_CASTEiJ_G0023094	Rab5a	74	38.125	MGP_CASTEiJ_G0015254	Rab23	67	38.125
MGP_CASTEiJ_G0023094	Rab5a	100	87.500	MGP_CASTEiJ_G0018472	Rab5c	100	87.500
MGP_CASTEiJ_G0023094	Rab5a	90	43.814	MGP_CASTEiJ_G0017380	Rab1a	95	43.814
MGP_CASTEiJ_G0023094	Rab5a	75	36.585	MGP_CASTEiJ_G0034827	Rab39b	77	36.585
MGP_CASTEiJ_G0023094	Rab5a	73	32.500	MGP_CASTEiJ_G0018075	Rab34	62	32.500
MGP_CASTEiJ_G0023094	Rab5a	90	40.816	MGP_CASTEiJ_G0023338	Rab18	93	40.816
MGP_CASTEiJ_G0023094	Rab5a	90	46.429	MGP_CASTEiJ_G0023899	Rab1b	96	46.429
MGP_CASTEiJ_G0023094	Rab5a	55	30.159	MGP_CASTEiJ_G0019000	Arl4a	60	30.159
MGP_CASTEiJ_G0023094	Rab5a	95	42.718	MGP_CASTEiJ_G0034188	Rab6b	98	42.718
MGP_CASTEiJ_G0023094	Rab5a	90	35.323	MGP_CASTEiJ_G0035073	Rab9b	97	35.323
MGP_CASTEiJ_G0023094	Rab5a	90	37.436	MGP_CASTEiJ_G0029079	Rab35	96	37.436
MGP_CASTEiJ_G0023094	Rab5a	75	41.615	MGP_CASTEiJ_G0027193	Rab2a	97	36.667
MGP_CASTEiJ_G0023094	Rab5a	80	31.667	MGP_CASTEiJ_G0030551	Kras	94	31.667
MGP_CASTEiJ_G0023094	Rab5a	90	49.231	MGP_CASTEiJ_G0026136	Rab22a	98	49.231
MGP_CASTEiJ_G0023094	Rab5a	78	41.916	MGP_CASTEiJ_G0020554	Rab2b	79	44.079
MGP_CASTEiJ_G0023094	Rab5a	91	47.449	MGP_CASTEiJ_G0023184	Rab31	98	47.449
MGP_CASTEiJ_G0023094	Rab5a	89	38.614	MGP_CASTEiJ_G0024846	Rab14	94	38.614
MGP_CASTEiJ_G0023094	Rab5a	95	41.951	MGP_CASTEiJ_G0018675	Rab37	93	41.951
MGP_CASTEiJ_G0023094	Rab5a	77	40.351	MGP_CASTEiJ_G0026366	Rab33b	75	40.351
MGP_CASTEiJ_G0023094	Rab5a	60	32.576	MGP_CASTEiJ_G0015866	Arl8a	66	32.576
MGP_CASTEiJ_G0023094	Rab5a	81	37.989	MGP_CASTEiJ_G0023193	Rab12	62	37.989
MGP_CASTEiJ_G0023094	Rab5a	90	40.704	MGP_CASTEiJ_G0026561	Rab25	93	40.704
MGP_CASTEiJ_G0023094	Rab5a	82	31.667	MGP_CASTEiJ_G0032241	Hras	94	31.667