EuRBPDB

Description

Ensembl ID: MGP_CASTEiJ_G0023333 (Gene tree)
Gene ID: -
Gene Symbol: Zeb1
Alias: 3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1
Full Name: zinc finger E-box binding homeobox 1
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 198674 bases
Position: chr18:2451717-2650390
Accession: 1344313
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0048681	zf-C2H2	PF00096.26	3.1e-24	1	6
MGP_CASTEiJ_P0048681	zf-C2H2	PF00096.26	3.1e-24	2	6
MGP_CASTEiJ_P0048681	zf-C2H2	PF00096.26	3.1e-24	3	6
MGP_CASTEiJ_P0048681	zf-C2H2	PF00096.26	3.1e-24	4	6
MGP_CASTEiJ_P0048681	zf-C2H2	PF00096.26	3.1e-24	5	6
MGP_CASTEiJ_P0048681	zf-C2H2	PF00096.26	3.1e-24	6	6
MGP_CASTEiJ_P0048675	zf-C2H2	PF00096.26	1.5e-17	1	4
MGP_CASTEiJ_P0048675	zf-C2H2	PF00096.26	1.5e-17	2	4
MGP_CASTEiJ_P0048675	zf-C2H2	PF00096.26	1.5e-17	3	4
MGP_CASTEiJ_P0048675	zf-C2H2	PF00096.26	1.5e-17	4	4
MGP_CASTEiJ_P0048681	zf-met	PF12874.7	2.2e-08	1	2
MGP_CASTEiJ_P0048681	zf-met	PF12874.7	2.2e-08	2	2
MGP_CASTEiJ_P0048675	zf-met	PF12874.7	5.1e-06	1	2
MGP_CASTEiJ_P0048675	zf-met	PF12874.7	5.1e-06	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0048678	-	819	-	-	- (aa)	-	-
MGP_CASTEiJ_T0048679	-	2464	-	-	- (aa)	-	-
MGP_CASTEiJ_T0048672	-	1861	-	-	- (aa)	-	-
MGP_CASTEiJ_T0048673	-	1430	-	MGP_CASTEiJ_P0048673	93 (aa)	-	-
MGP_CASTEiJ_T0048676	-	790	-	-	- (aa)	-	-
MGP_CASTEiJ_T0048677	-	774	-	MGP_CASTEiJ_P0048677	154 (aa)	-	-
MGP_CASTEiJ_T0048674	-	1181	-	MGP_CASTEiJ_P0048674	8 (aa)	-	-
MGP_CASTEiJ_T0048675	-	845	-	MGP_CASTEiJ_P0048675	281 (aa)	-	-
MGP_CASTEiJ_T0048682	-	2662	-	-	- (aa)	-	-
MGP_CASTEiJ_T0048681	-	5731	-	MGP_CASTEiJ_P0048681	1108 (aa)	-	-
MGP_CASTEiJ_T0048680	-	1601	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0023333	Zeb1	52	33.913	MGP_CASTEiJ_G0017666	Zfp672	90	37.500
MGP_CASTEiJ_G0023333	Zeb1	97	57.491	MGP_CASTEiJ_G0024915	Zeb2	88	58.763
MGP_CASTEiJ_G0023333	Zeb1	54	37.931	MGP_CASTEiJ_G0030265	Zfp637	50	48.684