EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0023577 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc2
Alias: Pabp|Pabp+|Pabp2
Full Name: poly(A) binding protein%2C cytoplasmic 2
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 2587 bases
Position: chr18:38030188-38032774
Accession: 1349723
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0049336	PABP	PF00658.18	1.9e-21	1	1
MGP_CASTEiJ_P0049336	RRM_5	PF13893.6	9.5e-10	1	2
MGP_CASTEiJ_P0049336	RRM_5	PF13893.6	9.5e-10	2	2
MGP_CASTEiJ_P0049336	RRM_1	PF00076.22	2.2e-86	1	4
MGP_CASTEiJ_P0049336	RRM_1	PF00076.22	2.2e-86	2	4
MGP_CASTEiJ_P0049336	RRM_1	PF00076.22	2.2e-86	3	4
MGP_CASTEiJ_P0049336	RRM_1	PF00076.22	2.2e-86	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0049336	-	2587	-	MGP_CASTEiJ_P0049336	629 (aa)	-	Q62029

Gene Model

Click here to download MGP_CASTEiJ_G0023577's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0023577's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0023577	Pabpc2	57	35.443	MGP_CASTEiJ_G0030063	Tia1	95	33.835
MGP_CASTEiJ_G0023577	Pabpc2	86	50.725	MGP_CASTEiJ_G0027214	-	94	50.725
MGP_CASTEiJ_G0023577	Pabpc2	99	69.829	MGP_CASTEiJ_G0022384	Pabpc6	99	69.829
MGP_CASTEiJ_G0023577	Pabpc2	100	60.972	MGP_CASTEiJ_G0021054	Pabpc1	99	76.724
MGP_CASTEiJ_G0023577	Pabpc2	59	34.940	MGP_CASTEiJ_G0027708	Elavl4	88	34.940
MGP_CASTEiJ_G0023577	Pabpc2	57	68.098	MGP_CASTEiJ_G0026358	Pabpc4l	95	68.098
MGP_CASTEiJ_G0023577	Pabpc2	50	35.036	MGP_CASTEiJ_G0032110	Tial1	92	33.750
MGP_CASTEiJ_G0023577	Pabpc2	50	38.554	MGP_CASTEiJ_G0016890	Celf5	68	38.554
MGP_CASTEiJ_G0023577	Pabpc2	98	57.325	MGP_CASTEiJ_G0026012	Pabpc1l	99	57.325
MGP_CASTEiJ_G0023577	Pabpc2	60	35.106	MGP_CASTEiJ_G0024960	Rbms1	53	35.106
MGP_CASTEiJ_G0023577	Pabpc2	59	34.667	MGP_CASTEiJ_G0029104	Rbm19	70	34.667
MGP_CASTEiJ_G0023577	Pabpc2	58	38.068	MGP_CASTEiJ_G0026760	Sf3b4	67	38.068
MGP_CASTEiJ_G0023577	Pabpc2	61	34.940	MGP_CASTEiJ_G0033478	Elavl3	90	34.940
MGP_CASTEiJ_G0023577	Pabpc2	59	36.145	MGP_CASTEiJ_G0027579	Elavl2	89	36.145
MGP_CASTEiJ_G0023577	Pabpc2	59	61.236	MGP_CASTEiJ_G0035010	Pabpc5	96	61.389
MGP_CASTEiJ_G0023577	Pabpc2	98	65.432	MGP_CASTEiJ_G0027867	Pabpc4	100	87.943