EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0023879 (Gene tree)
Gene ID: -
Gene Symbol: Rbm4
Alias: 4921506I22Rik|Lark1|Mlark|Rbm4a|lark
Full Name: RNA binding motif protein 4
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 10174 bases
Position: chr19:1664725-1674898
Accession: 1100865
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0050293	zf-CCHC	PF00098.23	4.2e-07	1	1
MGP_CASTEiJ_P0050293	RRM_5	PF13893.6	2.3e-16	1	3
MGP_CASTEiJ_P0050293	RRM_5	PF13893.6	2.3e-16	2	3
MGP_CASTEiJ_P0050293	RRM_5	PF13893.6	2.3e-16	3	3
MGP_CASTEiJ_P0050296	RRM_5	PF13893.6	1.4e-14	1	2
MGP_CASTEiJ_P0050296	RRM_5	PF13893.6	1.4e-14	2	2
MGP_CASTEiJ_P0050296	RRM_1	PF00076.22	1.5e-62	1	4
MGP_CASTEiJ_P0050296	RRM_1	PF00076.22	1.5e-62	2	4
MGP_CASTEiJ_P0050296	RRM_1	PF00076.22	1.5e-62	3	4
MGP_CASTEiJ_P0050296	RRM_1	PF00076.22	1.5e-62	4	4
MGP_CASTEiJ_P0050293	RRM_1	PF00076.22	2.6e-62	1	4
MGP_CASTEiJ_P0050293	RRM_1	PF00076.22	2.6e-62	2	4
MGP_CASTEiJ_P0050293	RRM_1	PF00076.22	2.6e-62	3	4
MGP_CASTEiJ_P0050293	RRM_1	PF00076.22	2.6e-62	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0050293	-	2976	-	MGP_CASTEiJ_P0050293	484 (aa)	-	Q8C7Q4
MGP_CASTEiJ_T0050297	-	2761	-	-	- (aa)	-	-
MGP_CASTEiJ_T0050296	-	1387	-	MGP_CASTEiJ_P0050296	266 (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0023879's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0023879's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0023879	Rbm4	53	31.081	MGP_CASTEiJ_G0027708	Elavl4	61	30.120
MGP_CASTEiJ_G0023879	Rbm4	80	33.036	MGP_CASTEiJ_G0020659	Pspc1	91	36.667
MGP_CASTEiJ_G0023879	Rbm4	99	75.211	MGP_CASTEiJ_G0023877	Gm21992	100	74.581
MGP_CASTEiJ_G0023879	Rbm4	100	97.163	MGP_CASTEiJ_G0023878	Rbm4b	100	97.163
MGP_CASTEiJ_G0023879	Rbm4	99	43.939	MGP_CASTEiJ_G0023880	Rbm14	94	41.964
MGP_CASTEiJ_G0023879	Rbm4	52	35.484	MGP_CASTEiJ_G0025991	Srsf6	56	35.484