EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0024960 (Gene tree)
Gene ID: -
Gene Symbol: Rbms1
Alias: 2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|Mssp|Mssp1|YC1
Full Name: RNA binding motif%2C single stranded interacting protein 1
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 223378 bases
Position: chr2:59770248-59993625
Accession: 1861774
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0054819	RRM_1	PF00076.22	1.4e-32	1	2
MGP_CASTEiJ_P0054819	RRM_1	PF00076.22	1.4e-32	2	2
MGP_CASTEiJ_P0054816	RRM_1	PF00076.22	1.7e-32	1	2
MGP_CASTEiJ_P0054816	RRM_1	PF00076.22	1.7e-32	2	2
MGP_CASTEiJ_P0054817	RRM_1	PF00076.22	1.8e-32	1	2
MGP_CASTEiJ_P0054817	RRM_1	PF00076.22	1.8e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0054824	-	202	-	-	- (aa)	-	-
MGP_CASTEiJ_T0054825	-	123	-	-	- (aa)	-	-
MGP_CASTEiJ_T0054822	-	224	-	-	- (aa)	-	-
MGP_CASTEiJ_T0054823	-	217	-	-	- (aa)	-	-
MGP_CASTEiJ_T0054820	-	644	-	-	- (aa)	-	-
MGP_CASTEiJ_T0054821	-	757	-	-	- (aa)	-	-
MGP_CASTEiJ_T0054819	-	1800	-	MGP_CASTEiJ_P0054819	386 (aa)	-	-
MGP_CASTEiJ_T0054818	-	1164	-	MGP_CASTEiJ_P0054818	241 (aa)	-	-
MGP_CASTEiJ_T0054817	-	2538	-	MGP_CASTEiJ_P0054817	417 (aa)	-	-
MGP_CASTEiJ_T0054816	-	4440	XM_006499940	MGP_CASTEiJ_P0054816	403 (aa)	XP_006500003	Q91W59

Gene Model

Click here to download MGP_CASTEiJ_G0024960's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0024960's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0024960	Rbms1	52	34.884	MGP_CASTEiJ_G0027214	-	57	34.884
MGP_CASTEiJ_G0024960	Rbms1	56	30.769	MGP_CASTEiJ_G0026012	Pabpc1l	59	30.818
MGP_CASTEiJ_G0024960	Rbms1	61	42.105	MGP_CASTEiJ_G0025323	Celf1	53	42.105
MGP_CASTEiJ_G0024960	Rbms1	53	32.632	MGP_CASTEiJ_G0027867	Pabpc4	57	32.584
MGP_CASTEiJ_G0024960	Rbms1	65	42.105	MGP_CASTEiJ_G0033906	Celf6	53	41.558
MGP_CASTEiJ_G0024960	Rbms1	99	66.753	MGP_CASTEiJ_G0017172	Rbms2	86	71.758
MGP_CASTEiJ_G0024960	Rbms1	61	40.645	MGP_CASTEiJ_G0027579	Elavl2	60	41.558
MGP_CASTEiJ_G0024960	Rbms1	62	32.558	MGP_CASTEiJ_G0030063	Tia1	78	32.787
MGP_CASTEiJ_G0024960	Rbms1	96	71.538	MGP_CASTEiJ_G0034390	Rbms3	99	80.841
MGP_CASTEiJ_G0024960	Rbms1	68	35.000	MGP_CASTEiJ_G0033478	Elavl3	58	38.686
MGP_CASTEiJ_G0024960	Rbms1	73	40.789	MGP_CASTEiJ_G0024528	Celf2	52	40.789
MGP_CASTEiJ_G0024960	Rbms1	68	34.637	MGP_CASTEiJ_G0027708	Elavl4	69	39.416
MGP_CASTEiJ_G0024960	Rbms1	52	42.105	MGP_CASTEiJ_G0023416	Celf4	51	41.558
MGP_CASTEiJ_G0024960	Rbms1	52	40.789	MGP_CASTEiJ_G0026707	Celf3	58	41.667
MGP_CASTEiJ_G0024960	Rbms1	53	31.469	MGP_CASTEiJ_G0021054	Pabpc1	55	31.469
MGP_CASTEiJ_G0024960	Rbms1	54	41.379	MGP_CASTEiJ_G0016890	Celf5	56	43.421
MGP_CASTEiJ_G0024960	Rbms1	53	35.106	MGP_CASTEiJ_G0023577	Pabpc2	60	35.106
MGP_CASTEiJ_G0024960	Rbms1	54	32.584	MGP_CASTEiJ_G0022384	Pabpc6	60	32.955