EuRBPDB

Description

Ensembl ID: MGP_CASTEiJ_G0025939 (Gene tree)
Gene ID: -
Gene Symbol: Rbm39
Alias: 1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|Caper|Caper alpha|R75070|Rnpc2|caper
Full Name: RNA binding motif protein 39
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 36866 bases
Position: chr2:159792977-159829842
Accession: 2157953
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0058647	RRM_1	PF00076.22	1.3e-41	1	2
MGP_CASTEiJ_P0058647	RRM_1	PF00076.22	1.3e-41	2	2
MGP_CASTEiJ_P0058648	RRM_1	PF00076.22	1.7e-41	1	2
MGP_CASTEiJ_P0058648	RRM_1	PF00076.22	1.7e-41	2	2
MGP_CASTEiJ_P0058650	RRM_1	PF00076.22	1.7e-41	1	2
MGP_CASTEiJ_P0058650	RRM_1	PF00076.22	1.7e-41	2	2
MGP_CASTEiJ_P0058653	RRM_1	PF00076.22	2.3e-22	1	1
MGP_CASTEiJ_P0058654	RRM_1	PF00076.22	9.6e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0058671	-	715	-	-	- (aa)	-	-
MGP_CASTEiJ_T0058670	-	1008	-	-	- (aa)	-	-
MGP_CASTEiJ_T0058651	-	2120	-	MGP_CASTEiJ_P0058651	40 (aa)	-	-
MGP_CASTEiJ_T0058650	-	2712	-	MGP_CASTEiJ_P0058650	524 (aa)	-	-
MGP_CASTEiJ_T0058653	-	931	-	MGP_CASTEiJ_P0058653	310 (aa)	-	-
MGP_CASTEiJ_T0058652	-	2127	-	MGP_CASTEiJ_P0058652	47 (aa)	-	-
MGP_CASTEiJ_T0058655	-	695	-	-	- (aa)	-	-
MGP_CASTEiJ_T0058654	-	1090	-	MGP_CASTEiJ_P0058654	273 (aa)	-	-
MGP_CASTEiJ_T0058657	-	1457	-	-	- (aa)	-	-
MGP_CASTEiJ_T0058656	-	546	-	-	- (aa)	-	-
MGP_CASTEiJ_T0058659	-	497	-	-	- (aa)	-	-
MGP_CASTEiJ_T0058658	-	754	-	MGP_CASTEiJ_P0058658	156 (aa)	-	-
MGP_CASTEiJ_T0058668	-	672	-	-	- (aa)	-	-
MGP_CASTEiJ_T0058669	-	699	-	MGP_CASTEiJ_P0058669	40 (aa)	-	-
MGP_CASTEiJ_T0058660	-	714	-	-	- (aa)	-	-
MGP_CASTEiJ_T0058661	-	685	-	-	- (aa)	-	-
MGP_CASTEiJ_T0058662	-	707	-	MGP_CASTEiJ_P0058662	40 (aa)	-	-
MGP_CASTEiJ_T0058663	-	593	-	MGP_CASTEiJ_P0058663	39 (aa)	-	-
MGP_CASTEiJ_T0058664	-	710	-	-	- (aa)	-	-
MGP_CASTEiJ_T0058665	-	585	-	MGP_CASTEiJ_P0058665	62 (aa)	-	-
MGP_CASTEiJ_T0058666	-	743	-	MGP_CASTEiJ_P0058666	40 (aa)	-	-
MGP_CASTEiJ_T0058667	-	667	-	MGP_CASTEiJ_P0058667	38 (aa)	-	-
MGP_CASTEiJ_T0058647	-	2811	XM_006498832	MGP_CASTEiJ_P0058647	530 (aa)	XP_006498895	Q8VH51
MGP_CASTEiJ_T0058648	-	2581	-	MGP_CASTEiJ_P0058648	524 (aa)	-	-
MGP_CASTEiJ_T0058649	-	2745	-	MGP_CASTEiJ_P0058649	415 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0025939	Rbm39	52	34.483	MGP_CASTEiJ_G0016822	-	94	34.483