EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0025989 (Gene tree)
Gene ID: -
Gene Symbol: Chd6
Alias: 5430439G14Rik|6330406J24Rik|CHD-6|Kiaa1335
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 171033 bases
Position: chr2:164907385-165078417
Accession: 1918639
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0058930	ResIII	PF04851.15	4.3e-08	1	1
MGP_CASTEiJ_P0058926	ResIII	PF04851.15	2.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0058935	-	675	-	MGP_CASTEiJ_P0058935	217 (aa)	-	-
MGP_CASTEiJ_T0058934	-	636	-	-	- (aa)	-	-
MGP_CASTEiJ_T0058929	-	3971	-	-	- (aa)	-	-
MGP_CASTEiJ_T0058928	-	764	-	-	- (aa)	-	-
MGP_CASTEiJ_T0058927	-	735	-	-	- (aa)	-	-
MGP_CASTEiJ_T0058926	-	10515	XM_006500181	MGP_CASTEiJ_P0058926	2711 (aa)	XP_011238078	A3KFM7
MGP_CASTEiJ_T0058936	-	5052	-	-	- (aa)	-	-
MGP_CASTEiJ_T0058930	-	3608	-	MGP_CASTEiJ_P0058930	1183 (aa)	-	-
MGP_CASTEiJ_T0058931	-	601	-	-	- (aa)	-	-
MGP_CASTEiJ_T0058932	-	3092	-	-	- (aa)	-	-
MGP_CASTEiJ_T0058933	-	616	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0025989's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0025989's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0025989	Chd6	61	37.625	MGP_CASTEiJ_G0031401	Chd2	63	32.583
MGP_CASTEiJ_G0025989	Chd6	66	36.621	MGP_CASTEiJ_G0028296	Chd5	51	34.657
MGP_CASTEiJ_G0025989	Chd6	87	68.882	MGP_CASTEiJ_G0032944	Chd9	72	62.298
MGP_CASTEiJ_G0025989	Chd6	76	67.013	MGP_CASTEiJ_G0027194	Chd7	72	64.967