EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0025991 (Gene tree)
Gene ID: -
Gene Symbol: Srsf6
Alias: 1210001E11Rik|AI314910|AW146126|Sfrs6|Srp55
Full Name: serine/arginine-rich splicing factor 6
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 5596 bases
Position: chr2:166931298-166936893
Accession: 1915246
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0058944	RRM_1	PF00076.22	8.5e-32	1	2
MGP_CASTEiJ_P0058944	RRM_1	PF00076.22	8.5e-32	2	2
MGP_CASTEiJ_P0058946	RRM_1	PF00076.22	2.1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0058943	-	2894	-	-	- (aa)	-	-
MGP_CASTEiJ_T0058945	-	1666	-	MGP_CASTEiJ_P0058945	135 (aa)	-	-
MGP_CASTEiJ_T0058944	-	3533	-	MGP_CASTEiJ_P0058944	339 (aa)	-	-
MGP_CASTEiJ_T0058946	-	515	-	MGP_CASTEiJ_P0058946	135 (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0025991's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0025991's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0025991	Srsf6	56	35.484	MGP_CASTEiJ_G0023879	Rbm4	52	35.484
MGP_CASTEiJ_G0025991	Srsf6	58	40.670	MGP_CASTEiJ_G0018229	Srsf1	82	42.857
MGP_CASTEiJ_G0025991	Srsf6	53	35.443	MGP_CASTEiJ_G0034713	Rbmx	77	35.443
MGP_CASTEiJ_G0025991	Srsf6	51	47.297	MGP_CASTEiJ_G0029069	Srsf9	70	38.674
MGP_CASTEiJ_G0025991	Srsf6	56	44.304	MGP_CASTEiJ_G0022681	Srsf3	64	44.304
MGP_CASTEiJ_G0025991	Srsf6	56	35.526	MGP_CASTEiJ_G0025904	Raly	54	35.526
MGP_CASTEiJ_G0025991	Srsf6	56	39.744	MGP_CASTEiJ_G0021144	Gm12355	59	39.744
MGP_CASTEiJ_G0025991	Srsf6	61	31.868	MGP_CASTEiJ_G0016816	Cirbp	84	31.868