EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0026012 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc1l
Alias: 1810053B01Rik|Epab|ePAB
Full Name: poly(A) binding protein%2C cytoplasmic 1-like
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 27230 bases
Position: chr2:168127464-168154693
Accession: 1922908
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0059020	PABP	PF00658.18	1.9e-23	1	1
MGP_CASTEiJ_P0059020	RRM_5	PF13893.6	3.3e-17	1	3
MGP_CASTEiJ_P0059020	RRM_5	PF13893.6	3.3e-17	2	3
MGP_CASTEiJ_P0059020	RRM_5	PF13893.6	3.3e-17	3	3
MGP_CASTEiJ_P0059020	RRM_1	PF00076.22	3.6e-90	1	4
MGP_CASTEiJ_P0059020	RRM_1	PF00076.22	3.6e-90	2	4
MGP_CASTEiJ_P0059020	RRM_1	PF00076.22	3.6e-90	3	4
MGP_CASTEiJ_P0059020	RRM_1	PF00076.22	3.6e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0059024	-	759	-	-	- (aa)	-	-
MGP_CASTEiJ_T0059021	-	617	-	-	- (aa)	-	-
MGP_CASTEiJ_T0059020	-	2363	XM_006499825	MGP_CASTEiJ_P0059020	607 (aa)	XP_006499888	A2A5N3
MGP_CASTEiJ_T0059023	-	328	-	-	- (aa)	-	-
MGP_CASTEiJ_T0059022	-	438	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0026012's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0026012's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0026012	Pabpc1l	59	30.818	MGP_CASTEiJ_G0024960	Rbms1	56	30.769
MGP_CASTEiJ_G0026012	Pabpc1l	88	48.780	MGP_CASTEiJ_G0027214	-	94	48.780
MGP_CASTEiJ_G0026012	Pabpc1l	59	60.736	MGP_CASTEiJ_G0026358	Pabpc4l	95	60.736
MGP_CASTEiJ_G0026012	Pabpc1l	53	34.884	MGP_CASTEiJ_G0024528	Celf2	57	34.884
MGP_CASTEiJ_G0026012	Pabpc1l	63	38.889	MGP_CASTEiJ_G0033478	Elavl3	59	30.488
MGP_CASTEiJ_G0026012	Pabpc1l	64	34.940	MGP_CASTEiJ_G0027579	Elavl2	92	34.940
MGP_CASTEiJ_G0026012	Pabpc1l	99	57.325	MGP_CASTEiJ_G0023577	Pabpc2	98	57.325
MGP_CASTEiJ_G0026012	Pabpc1l	57	34.118	MGP_CASTEiJ_G0026707	Celf3	67	32.857
MGP_CASTEiJ_G0026012	Pabpc1l	99	56.735	MGP_CASTEiJ_G0022384	Pabpc6	97	56.894
MGP_CASTEiJ_G0026012	Pabpc1l	64	57.022	MGP_CASTEiJ_G0035010	Pabpc5	96	56.944
MGP_CASTEiJ_G0026012	Pabpc1l	53	39.759	MGP_CASTEiJ_G0016816	Cirbp	91	39.759
MGP_CASTEiJ_G0026012	Pabpc1l	60	35.870	MGP_CASTEiJ_G0016890	Celf5	70	32.812
MGP_CASTEiJ_G0026012	Pabpc1l	99	53.492	MGP_CASTEiJ_G0021054	Pabpc1	98	53.492
MGP_CASTEiJ_G0026012	Pabpc1l	59	38.095	MGP_CASTEiJ_G0030063	Tia1	87	38.095
MGP_CASTEiJ_G0026012	Pabpc1l	62	33.735	MGP_CASTEiJ_G0027708	Elavl4	89	33.735
MGP_CASTEiJ_G0026012	Pabpc1l	59	30.818	MGP_CASTEiJ_G0034390	Rbms3	77	30.818
MGP_CASTEiJ_G0026012	Pabpc1l	98	59.969	MGP_CASTEiJ_G0027867	Pabpc4	100	79.433
MGP_CASTEiJ_G0026012	Pabpc1l	60	35.484	MGP_CASTEiJ_G0029104	Rbm19	72	36.066