EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0026105 (Gene tree)
Gene ID: -
Gene Symbol: Sall4
Alias: 5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20
Full Name: sal-like 4 (Drosophila)
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 21481 bases
Position: chr2:173264839-173286319
Accession: 2139360
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0059421	zf-C2H2	PF00096.26	1.4e-29	1	6
MGP_CASTEiJ_P0059421	zf-C2H2	PF00096.26	1.4e-29	2	6
MGP_CASTEiJ_P0059421	zf-C2H2	PF00096.26	1.4e-29	3	6
MGP_CASTEiJ_P0059421	zf-C2H2	PF00096.26	1.4e-29	4	6
MGP_CASTEiJ_P0059421	zf-C2H2	PF00096.26	1.4e-29	5	6
MGP_CASTEiJ_P0059421	zf-C2H2	PF00096.26	1.4e-29	6	6
MGP_CASTEiJ_P0059424	zf-C2H2	PF00096.26	2e-13	1	2
MGP_CASTEiJ_P0059424	zf-C2H2	PF00096.26	2e-13	2	2
MGP_CASTEiJ_P0059423	zf-C2H2	PF00096.26	3e-11	1	2
MGP_CASTEiJ_P0059423	zf-C2H2	PF00096.26	3e-11	2	2
MGP_CASTEiJ_P0059422	zf-C2H2	PF00096.26	3.2e-08	1	2
MGP_CASTEiJ_P0059422	zf-C2H2	PF00096.26	3.2e-08	2	2
MGP_CASTEiJ_P0059421	zf-met	PF12874.7	2.3e-11	1	1
MGP_CASTEiJ_P0059424	zf-met	PF12874.7	1.4e-09	1	2
MGP_CASTEiJ_P0059424	zf-met	PF12874.7	1.4e-09	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0059421	-	5069	XM_006500486	MGP_CASTEiJ_P0059421	1067 (aa)	XP_006500549	Q8BX22
MGP_CASTEiJ_T0059423	-	2529	-	MGP_CASTEiJ_P0059423	278 (aa)	-	-
MGP_CASTEiJ_T0059422	-	3737	-	MGP_CASTEiJ_P0059422	623 (aa)	-	-
MGP_CASTEiJ_T0059425	-	773	-	MGP_CASTEiJ_P0059425	215 (aa)	-	-
MGP_CASTEiJ_T0059424	-	393	-	MGP_CASTEiJ_P0059424	131 (aa)	-	-
MGP_CASTEiJ_T0059427	-	328	-	-	- (aa)	-	-
MGP_CASTEiJ_T0059426	-	423	-	-	- (aa)	-	-

Gene Model

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Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0026105's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0026105	Sall4	73	53.333	MGP_CASTEiJ_G0023809	Zfp236	81	53.333
MGP_CASTEiJ_G0026105	Sall4	98	84.507	MGP_CASTEiJ_G0023806	Sall3	66	65.385
MGP_CASTEiJ_G0026105	Sall4	100	64.706	MGP_CASTEiJ_G0032941	Sall1	99	64.706