EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0026358 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc4l
Alias: C330050A14Rik|EG241989
Full Name: poly(A) binding protein%2C cytoplasmic 4-like
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 5913 bases
Position: chr3:44429005-44434917
Accession: 3643087
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0060649	RRM_5	PF13893.6	1.6e-13	1	3
MGP_CASTEiJ_P0060649	RRM_5	PF13893.6	1.6e-13	2	3
MGP_CASTEiJ_P0060649	RRM_5	PF13893.6	1.6e-13	3	3
MGP_CASTEiJ_P0060650	RRM_5	PF13893.6	1.6e-13	1	3
MGP_CASTEiJ_P0060650	RRM_5	PF13893.6	1.6e-13	2	3
MGP_CASTEiJ_P0060650	RRM_5	PF13893.6	1.6e-13	3	3
MGP_CASTEiJ_P0060649	RRM_1	PF00076.22	4.8e-83	1	4
MGP_CASTEiJ_P0060649	RRM_1	PF00076.22	4.8e-83	2	4
MGP_CASTEiJ_P0060649	RRM_1	PF00076.22	4.8e-83	3	4
MGP_CASTEiJ_P0060649	RRM_1	PF00076.22	4.8e-83	4	4
MGP_CASTEiJ_P0060650	RRM_1	PF00076.22	4.8e-83	1	4
MGP_CASTEiJ_P0060650	RRM_1	PF00076.22	4.8e-83	2	4
MGP_CASTEiJ_P0060650	RRM_1	PF00076.22	4.8e-83	3	4
MGP_CASTEiJ_P0060650	RRM_1	PF00076.22	4.8e-83	4	4
MGP_CASTEiJ_P0060651	RRM_1	PF00076.22	1.9e-40	1	2
MGP_CASTEiJ_P0060651	RRM_1	PF00076.22	1.9e-40	2	2
MGP_CASTEiJ_P0060652	RRM_1	PF00076.22	2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0060652	-	466	-	MGP_CASTEiJ_P0060652	50 (aa)	-	-
MGP_CASTEiJ_T0060650	-	5141	-	MGP_CASTEiJ_P0060650	370 (aa)	-	-
MGP_CASTEiJ_T0060651	-	722	-	MGP_CASTEiJ_P0060651	172 (aa)	-	-
MGP_CASTEiJ_T0060649	-	5105	XM_006500774	MGP_CASTEiJ_P0060649	370 (aa)	XP_006500837	A0A0A6YWT2

Gene Model

Click here to download MGP_CASTEiJ_G0026358's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0026358's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0026358	Pabpc4l	95	30.539	MGP_CASTEiJ_G0030063	Tia1	95	30.000
MGP_CASTEiJ_G0026358	Pabpc4l	96	34.940	MGP_CASTEiJ_G0027579	Elavl2	89	34.940
MGP_CASTEiJ_G0026358	Pabpc4l	95	68.098	MGP_CASTEiJ_G0023577	Pabpc2	57	68.098
MGP_CASTEiJ_G0026358	Pabpc4l	65	34.211	MGP_CASTEiJ_G0025323	Celf1	57	37.879
MGP_CASTEiJ_G0026358	Pabpc4l	96	30.065	MGP_CASTEiJ_G0027708	Elavl4	70	35.484
MGP_CASTEiJ_G0026358	Pabpc4l	84	35.821	MGP_CASTEiJ_G0034524	Rbm3	90	35.385
MGP_CASTEiJ_G0026358	Pabpc4l	95	60.736	MGP_CASTEiJ_G0026012	Pabpc1l	59	60.736
MGP_CASTEiJ_G0026358	Pabpc4l	96	68.644	MGP_CASTEiJ_G0027214	-	58	68.644
MGP_CASTEiJ_G0026358	Pabpc4l	94	33.333	MGP_CASTEiJ_G0032110	Tial1	99	31.618
MGP_CASTEiJ_G0026358	Pabpc4l	89	31.875	MGP_CASTEiJ_G0027997	Trnau1ap	88	34.211
MGP_CASTEiJ_G0026358	Pabpc4l	98	64.497	MGP_CASTEiJ_G0022384	Pabpc6	58	64.497
MGP_CASTEiJ_G0026358	Pabpc4l	98	70.552	MGP_CASTEiJ_G0027867	Pabpc4	100	69.565
MGP_CASTEiJ_G0026358	Pabpc4l	96	36.145	MGP_CASTEiJ_G0033478	Elavl3	90	36.145
MGP_CASTEiJ_G0026358	Pabpc4l	96	38.636	MGP_CASTEiJ_G0026760	Sf3b4	54	38.636
MGP_CASTEiJ_G0026358	Pabpc4l	97	57.865	MGP_CASTEiJ_G0035010	Pabpc5	96	57.967
MGP_CASTEiJ_G0026358	Pabpc4l	97	69.277	MGP_CASTEiJ_G0021054	Pabpc1	55	69.277
MGP_CASTEiJ_G0026358	Pabpc4l	52	31.461	MGP_CASTEiJ_G0028079	-	81	31.461