EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0026707 (Gene tree)
Gene ID: -
Gene Symbol: Celf3
Alias: 4930415M08Rik|BRUNOL1|CAGH4|ERDA4|Tnrc4
Full Name: CUGBP%2C Elav-like family member 3
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 15973 bases
Position: chr3:93901123-93917095
Accession: 1926034
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0062161	RRM_1	PF00076.22	9.4e-54	1	3
MGP_CASTEiJ_P0062161	RRM_1	PF00076.22	9.4e-54	2	3
MGP_CASTEiJ_P0062161	RRM_1	PF00076.22	9.4e-54	3	3
MGP_CASTEiJ_P0062160	RRM_1	PF00076.22	1.5e-53	1	3
MGP_CASTEiJ_P0062160	RRM_1	PF00076.22	1.5e-53	2	3
MGP_CASTEiJ_P0062160	RRM_1	PF00076.22	1.5e-53	3	3
MGP_CASTEiJ_P0062158	RRM_1	PF00076.22	2e-53	1	3
MGP_CASTEiJ_P0062158	RRM_1	PF00076.22	2e-53	2	3
MGP_CASTEiJ_P0062158	RRM_1	PF00076.22	2e-53	3	3
MGP_CASTEiJ_P0062166	RRM_1	PF00076.22	7e-16	1	1
MGP_CASTEiJ_P0062167	RRM_1	PF00076.22	1.1e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0062164	-	2442	-	-	- (aa)	-	-
MGP_CASTEiJ_T0062165	-	2933	-	-	- (aa)	-	-
MGP_CASTEiJ_T0062170	-	852	-	-	- (aa)	-	-
MGP_CASTEiJ_T0062168	-	3356	-	-	- (aa)	-	-
MGP_CASTEiJ_T0062169	-	886	-	-	- (aa)	-	-
MGP_CASTEiJ_T0062166	-	779	-	MGP_CASTEiJ_P0062166	182 (aa)	-	-
MGP_CASTEiJ_T0062167	-	726	-	MGP_CASTEiJ_P0062167	231 (aa)	-	-
MGP_CASTEiJ_T0062159	-	366	-	MGP_CASTEiJ_P0062159	31 (aa)	-	-
MGP_CASTEiJ_T0062158	-	2388	XM_006502323	MGP_CASTEiJ_P0062158	493 (aa)	XP_006502386	Q8CIN6
MGP_CASTEiJ_T0062162	-	1193	-	-	- (aa)	-	-
MGP_CASTEiJ_T0062163	-	669	-	-	- (aa)	-	-
MGP_CASTEiJ_T0062160	-	2745	-	MGP_CASTEiJ_P0062160	464 (aa)	-	-
MGP_CASTEiJ_T0062161	-	2352	-	MGP_CASTEiJ_P0062161	415 (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0026707's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0026707's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0026707	Celf3	58	41.667	MGP_CASTEiJ_G0024960	Rbms1	52	40.789
MGP_CASTEiJ_G0026707	Celf3	100	69.072	MGP_CASTEiJ_G0023416	Celf4	97	66.109
MGP_CASTEiJ_G0026707	Celf3	100	66.848	MGP_CASTEiJ_G0016890	Celf5	93	76.744
MGP_CASTEiJ_G0026707	Celf3	61	40.741	MGP_CASTEiJ_G0027708	Elavl4	85	40.741
MGP_CASTEiJ_G0026707	Celf3	91	39.474	MGP_CASTEiJ_G0034390	Rbms3	76	39.474
MGP_CASTEiJ_G0026707	Celf3	89	53.804	MGP_CASTEiJ_G0025323	Celf1	97	43.408
MGP_CASTEiJ_G0026707	Celf3	90	55.801	MGP_CASTEiJ_G0024528	Celf2	94	83.333
MGP_CASTEiJ_G0026707	Celf3	98	35.632	MGP_CASTEiJ_G0033478	Elavl3	89	34.940
MGP_CASTEiJ_G0026707	Celf3	77	37.805	MGP_CASTEiJ_G0030063	Tia1	93	38.667
MGP_CASTEiJ_G0026707	Celf3	70	34.091	MGP_CASTEiJ_G0032110	Tial1	81	37.333
MGP_CASTEiJ_G0026707	Celf3	81	87.368	MGP_CASTEiJ_G0033906	Celf6	75	85.526
MGP_CASTEiJ_G0026707	Celf3	67	32.857	MGP_CASTEiJ_G0026012	Pabpc1l	57	34.118
MGP_CASTEiJ_G0026707	Celf3	75	37.500	MGP_CASTEiJ_G0022384	Pabpc6	57	37.500
MGP_CASTEiJ_G0026707	Celf3	63	41.975	MGP_CASTEiJ_G0027579	Elavl2	76	41.975
MGP_CASTEiJ_G0026707	Celf3	61	30.526	MGP_CASTEiJ_G0035010	Pabpc5	61	36.709