EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0026760 (Gene tree)
Gene ID: -
Gene Symbol: Sf3b4
Alias: 49kDa|SF3b49|SF3b50|Sap49
Full Name: splicing factor 3b%2C subunit 4
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 5177 bases
Position: chr3:95711351-95716527
Accession: 109580
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0062485	RRM_1	PF00076.22	5.6e-39	1	2
MGP_CASTEiJ_P0062485	RRM_1	PF00076.22	5.6e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0062485	-	1919	-	MGP_CASTEiJ_P0062485	424 (aa)	-	Q8QZY9
MGP_CASTEiJ_T0062486	-	437	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0026760's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0026760's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0026760	Sf3b4	67	38.068	MGP_CASTEiJ_G0023577	Pabpc2	58	38.068
MGP_CASTEiJ_G0026760	Sf3b4	50	38.798	MGP_CASTEiJ_G0022384	Pabpc6	58	38.798
MGP_CASTEiJ_G0026760	Sf3b4	54	38.636	MGP_CASTEiJ_G0026358	Pabpc4l	96	38.636
MGP_CASTEiJ_G0026760	Sf3b4	70	39.344	MGP_CASTEiJ_G0021054	Pabpc1	56	39.344