EuRBPDB

Description

Ensembl ID: MGP_CASTEiJ_G0027194 (Gene tree)
Gene ID: -
Gene Symbol: Chd7
Alias: A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis
Full Name: chromodomain helicase DNA binding protein 7
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 182744 bases
Position: chr4:5211917-5394660
Accession: 2444748
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0064592	ResIII	PF04851.15	4.6e-06	1	1
MGP_CASTEiJ_P0064593	ResIII	PF04851.15	4.6e-06	1	1
MGP_CASTEiJ_P0064592	BRK	PF07533.16	4.8e-37	1	2
MGP_CASTEiJ_P0064592	BRK	PF07533.16	4.8e-37	2	2
MGP_CASTEiJ_P0064593	BRK	PF07533.16	4.8e-37	1	2
MGP_CASTEiJ_P0064593	BRK	PF07533.16	4.8e-37	2	2
MGP_CASTEiJ_P0064595	BRK	PF07533.16	1.3e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0064591	-	2381	-	MGP_CASTEiJ_P0064591	631 (aa)	-	-
MGP_CASTEiJ_T0064590	-	4943	-	-	- (aa)	-	-
MGP_CASTEiJ_T0064593	-	10216	-	MGP_CASTEiJ_P0064593	2986 (aa)	-	-
MGP_CASTEiJ_T0064592	-	9445	-	MGP_CASTEiJ_P0064592	2986 (aa)	-	-
MGP_CASTEiJ_T0064595	-	3463	-	MGP_CASTEiJ_P0064595	941 (aa)	-	-
MGP_CASTEiJ_T0064594	-	448	-	MGP_CASTEiJ_P0064594	19 (aa)	-	-
MGP_CASTEiJ_T0064596	-	741	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0027194	Chd7	72	64.967	MGP_CASTEiJ_G0025989	Chd6	76	67.013
MGP_CASTEiJ_G0027194	Chd7	94	54.201	MGP_CASTEiJ_G0032944	Chd9	82	71.016