EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0027708 (Gene tree)
Gene ID: -
Gene Symbol: Elavl4
Alias: Elav|Hud|PNEM
Full Name: ELAV (embryonic lethal%2C abnormal vision%2C Drosophila)-like 4 (Hu antigen D)
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 147594 bases
Position: chr4:108288003-108435596
Accession: 107427
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0066978	RRM_5	PF13893.6	2.9e-13	1	2
MGP_CASTEiJ_P0066978	RRM_5	PF13893.6	2.9e-13	2	2
MGP_CASTEiJ_P0066975	RRM_5	PF13893.6	3.2e-13	1	2
MGP_CASTEiJ_P0066975	RRM_5	PF13893.6	3.2e-13	2	2
MGP_CASTEiJ_P0066976	RRM_5	PF13893.6	3.3e-13	1	2
MGP_CASTEiJ_P0066976	RRM_5	PF13893.6	3.3e-13	2	2
MGP_CASTEiJ_P0066977	RRM_5	PF13893.6	3.5e-13	1	2
MGP_CASTEiJ_P0066977	RRM_5	PF13893.6	3.5e-13	2	2
MGP_CASTEiJ_P0066981	RRM_5	PF13893.6	3.7e-13	1	2
MGP_CASTEiJ_P0066981	RRM_5	PF13893.6	3.7e-13	2	2
MGP_CASTEiJ_P0066980	RRM_5	PF13893.6	4e-13	1	2
MGP_CASTEiJ_P0066980	RRM_5	PF13893.6	4e-13	2	2
MGP_CASTEiJ_P0066979	RRM_5	PF13893.6	4e-13	1	2
MGP_CASTEiJ_P0066979	RRM_5	PF13893.6	4e-13	2	2
MGP_CASTEiJ_P0066978	RRM_1	PF00076.22	2.2e-65	1	3
MGP_CASTEiJ_P0066978	RRM_1	PF00076.22	2.2e-65	2	3
MGP_CASTEiJ_P0066978	RRM_1	PF00076.22	2.2e-65	3	3
MGP_CASTEiJ_P0066976	RRM_1	PF00076.22	2.4e-65	1	3
MGP_CASTEiJ_P0066976	RRM_1	PF00076.22	2.4e-65	2	3
MGP_CASTEiJ_P0066976	RRM_1	PF00076.22	2.4e-65	3	3
MGP_CASTEiJ_P0066975	RRM_1	PF00076.22	2.5e-65	1	3
MGP_CASTEiJ_P0066975	RRM_1	PF00076.22	2.5e-65	2	3
MGP_CASTEiJ_P0066975	RRM_1	PF00076.22	2.5e-65	3	3
MGP_CASTEiJ_P0066977	RRM_1	PF00076.22	2.6e-65	1	3
MGP_CASTEiJ_P0066977	RRM_1	PF00076.22	2.6e-65	2	3
MGP_CASTEiJ_P0066977	RRM_1	PF00076.22	2.6e-65	3	3
MGP_CASTEiJ_P0066981	RRM_1	PF00076.22	2.9e-65	1	3
MGP_CASTEiJ_P0066981	RRM_1	PF00076.22	2.9e-65	2	3
MGP_CASTEiJ_P0066981	RRM_1	PF00076.22	2.9e-65	3	3
MGP_CASTEiJ_P0066980	RRM_1	PF00076.22	3e-65	1	3
MGP_CASTEiJ_P0066980	RRM_1	PF00076.22	3e-65	2	3
MGP_CASTEiJ_P0066980	RRM_1	PF00076.22	3e-65	3	3
MGP_CASTEiJ_P0066979	RRM_1	PF00076.22	3.1e-65	1	3
MGP_CASTEiJ_P0066979	RRM_1	PF00076.22	3.1e-65	2	3
MGP_CASTEiJ_P0066979	RRM_1	PF00076.22	3.1e-65	3	3
MGP_CASTEiJ_P0066983	RRM_1	PF00076.22	1.3e-20	1	1
MGP_CASTEiJ_P0066985	RRM_1	PF00076.22	7e-13	1	1
MGP_CASTEiJ_P0066986	RRM_1	PF00076.22	9.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0066980	-	3801	-	MGP_CASTEiJ_P0066980	383 (aa)	-	-
MGP_CASTEiJ_T0066981	-	4024	-	MGP_CASTEiJ_P0066981	380 (aa)	-	-
MGP_CASTEiJ_T0066982	-	868	-	-	- (aa)	-	-
MGP_CASTEiJ_T0066983	-	644	-	MGP_CASTEiJ_P0066983	137 (aa)	-	-
MGP_CASTEiJ_T0066979	-	4151	-	MGP_CASTEiJ_P0066979	385 (aa)	-	-
MGP_CASTEiJ_T0066978	-	3763	-	MGP_CASTEiJ_P0066978	356 (aa)	-	-
MGP_CASTEiJ_T0066986	-	488	-	MGP_CASTEiJ_P0066986	92 (aa)	-	-
MGP_CASTEiJ_T0066975	-	3997	XM_006502793	MGP_CASTEiJ_P0066975	366 (aa)	XP_006502856	Q61701
MGP_CASTEiJ_T0066984	-	464	-	-	- (aa)	-	-
MGP_CASTEiJ_T0066977	-	4109	-	MGP_CASTEiJ_P0066977	371 (aa)	-	-
MGP_CASTEiJ_T0066976	-	3777	-	MGP_CASTEiJ_P0066976	366 (aa)	-	-
MGP_CASTEiJ_T0066985	-	661	-	MGP_CASTEiJ_P0066985	94 (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0027708's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0027708's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0027708	Elavl4	74	33.708	MGP_CASTEiJ_G0034713	Rbmx	86	33.708
MGP_CASTEiJ_G0027708	Elavl4	57	37.037	MGP_CASTEiJ_G0029200	Snrnp35	59	33.803
MGP_CASTEiJ_G0027708	Elavl4	85	40.741	MGP_CASTEiJ_G0033906	Celf6	95	35.802
MGP_CASTEiJ_G0027708	Elavl4	88	34.940	MGP_CASTEiJ_G0023577	Pabpc2	59	34.940
MGP_CASTEiJ_G0027708	Elavl4	78	40.741	MGP_CASTEiJ_G0025323	Celf1	62	40.741
MGP_CASTEiJ_G0027708	Elavl4	99	79.893	MGP_CASTEiJ_G0033478	Elavl3	99	80.323
MGP_CASTEiJ_G0027708	Elavl4	70	38.889	MGP_CASTEiJ_G0016816	Cirbp	84	38.889
MGP_CASTEiJ_G0027708	Elavl4	88	35.897	MGP_CASTEiJ_G0032110	Tial1	73	35.897
MGP_CASTEiJ_G0027708	Elavl4	69	39.416	MGP_CASTEiJ_G0024960	Rbms1	68	34.637
MGP_CASTEiJ_G0027708	Elavl4	99	89.315	MGP_CASTEiJ_G0027579	Elavl2	100	89.751
MGP_CASTEiJ_G0027708	Elavl4	88	32.468	MGP_CASTEiJ_G0022384	Pabpc6	60	32.468
MGP_CASTEiJ_G0027708	Elavl4	88	38.272	MGP_CASTEiJ_G0023416	Celf4	91	35.802
MGP_CASTEiJ_G0027708	Elavl4	78	30.088	MGP_CASTEiJ_G0018234	Msi2	84	30.208
MGP_CASTEiJ_G0027708	Elavl4	61	30.120	MGP_CASTEiJ_G0023879	Rbm4	53	31.081
MGP_CASTEiJ_G0027708	Elavl4	58	31.646	MGP_CASTEiJ_G0034524	Rbm3	82	38.710
MGP_CASTEiJ_G0027708	Elavl4	72	35.821	MGP_CASTEiJ_G0029820	Tra2a	59	37.097
MGP_CASTEiJ_G0027708	Elavl4	88	36.145	MGP_CASTEiJ_G0021054	Pabpc1	55	36.145
MGP_CASTEiJ_G0027708	Elavl4	89	33.735	MGP_CASTEiJ_G0026012	Pabpc1l	62	33.735
MGP_CASTEiJ_G0027708	Elavl4	54	33.784	MGP_CASTEiJ_G0026783	Rbm8a	62	30.693
MGP_CASTEiJ_G0027708	Elavl4	70	35.484	MGP_CASTEiJ_G0026358	Pabpc4l	96	30.065
MGP_CASTEiJ_G0027708	Elavl4	57	35.185	MGP_CASTEiJ_G0025058	Rbm45	92	30.909
MGP_CASTEiJ_G0027708	Elavl4	94	35.897	MGP_CASTEiJ_G0030063	Tia1	98	32.895
MGP_CASTEiJ_G0027708	Elavl4	74	37.500	MGP_CASTEiJ_G0016890	Celf5	89	30.120
MGP_CASTEiJ_G0027708	Elavl4	85	40.741	MGP_CASTEiJ_G0026707	Celf3	61	40.741
MGP_CASTEiJ_G0027708	Elavl4	87	30.921	MGP_CASTEiJ_G0027867	Pabpc4	96	32.576
MGP_CASTEiJ_G0027708	Elavl4	66	42.373	MGP_CASTEiJ_G0016822	-	64	30.275
MGP_CASTEiJ_G0027708	Elavl4	70	36.458	MGP_CASTEiJ_G0034390	Rbms3	83	37.097
MGP_CASTEiJ_G0027708	Elavl4	81	38.272	MGP_CASTEiJ_G0024528	Celf2	61	38.272