EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0027867 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc4
Alias: -
Full Name: poly(A) binding protein%2C cytoplasmic 4
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 35620 bases
Position: chr4:121197511-121233130
Accession: 2385206
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0067687	PABP	PF00658.18	3.3e-31	1	1
MGP_CASTEiJ_P0067687	RRM_5	PF13893.6	8.9e-09	1	1
MGP_CASTEiJ_P0067687	RRM_1	PF00076.22	5.9e-90	1	4
MGP_CASTEiJ_P0067687	RRM_1	PF00076.22	5.9e-90	2	4
MGP_CASTEiJ_P0067687	RRM_1	PF00076.22	5.9e-90	3	4
MGP_CASTEiJ_P0067687	RRM_1	PF00076.22	5.9e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0067688	-	692	-	-	- (aa)	-	-
MGP_CASTEiJ_T0067689	-	1153	-	-	- (aa)	-	-
MGP_CASTEiJ_T0067685	-	245	-	-	- (aa)	-	-
MGP_CASTEiJ_T0067686	-	2724	-	MGP_CASTEiJ_P0067686	141 (aa)	-	-
MGP_CASTEiJ_T0067687	-	2286	-	MGP_CASTEiJ_P0067687	650 (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0027867's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0027867's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0027867	Pabpc4	92	31.061	MGP_CASTEiJ_G0033478	Elavl3	92	33.735
MGP_CASTEiJ_G0027867	Pabpc4	100	79.433	MGP_CASTEiJ_G0026012	Pabpc1l	98	59.969
MGP_CASTEiJ_G0027867	Pabpc4	100	95.035	MGP_CASTEiJ_G0021054	Pabpc1	98	88.571
MGP_CASTEiJ_G0027867	Pabpc4	98	39.394	MGP_CASTEiJ_G0030063	Tia1	95	33.333
MGP_CASTEiJ_G0027867	Pabpc4	57	32.584	MGP_CASTEiJ_G0024960	Rbms1	53	32.632
MGP_CASTEiJ_G0027867	Pabpc4	100	87.943	MGP_CASTEiJ_G0023577	Pabpc2	98	65.432
MGP_CASTEiJ_G0027867	Pabpc4	100	86.525	MGP_CASTEiJ_G0022384	Pabpc6	99	64.458
MGP_CASTEiJ_G0027867	Pabpc4	89	37.500	MGP_CASTEiJ_G0034524	Rbm3	87	40.000
MGP_CASTEiJ_G0027867	Pabpc4	56	36.709	MGP_CASTEiJ_G0018773	Rbfox3	67	39.130
MGP_CASTEiJ_G0027867	Pabpc4	86	32.258	MGP_CASTEiJ_G0025323	Celf1	70	38.636
MGP_CASTEiJ_G0027867	Pabpc4	100	69.565	MGP_CASTEiJ_G0026358	Pabpc4l	98	70.552
MGP_CASTEiJ_G0027867	Pabpc4	96	32.576	MGP_CASTEiJ_G0027708	Elavl4	87	30.921
MGP_CASTEiJ_G0027867	Pabpc4	50	34.722	MGP_CASTEiJ_G0034713	Rbmx	77	37.662
MGP_CASTEiJ_G0027867	Pabpc4	96	32.576	MGP_CASTEiJ_G0027579	Elavl2	89	34.940
MGP_CASTEiJ_G0027867	Pabpc4	99	30.657	MGP_CASTEiJ_G0024528	Celf2	59	37.500
MGP_CASTEiJ_G0027867	Pabpc4	87	72.029	MGP_CASTEiJ_G0027214	-	94	72.029
MGP_CASTEiJ_G0027867	Pabpc4	98	34.167	MGP_CASTEiJ_G0032110	Tial1	94	30.233
MGP_CASTEiJ_G0027867	Pabpc4	100	68.794	MGP_CASTEiJ_G0035010	Pabpc5	94	65.556