EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0028225 (Gene tree)
Gene ID: -
Gene Symbol: Plod1
Alias: 2410042F05Rik|AI854890|AV007929|LH1|Lh1|Plod|lysyl hydroxylase 1
Full Name: procollagen-lysine%2C 2-oxoglutarate 5-dioxygenase 1
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 30396 bases
Position: chr4:147017475-147047870
Accession: 99907
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0069303	2OG-FeII_Oxy	PF03171.20	4.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0069307	-	1059	-	MGP_CASTEiJ_P0069307	226 (aa)	-	-
MGP_CASTEiJ_T0069306	-	527	-	-	- (aa)	-	-
MGP_CASTEiJ_T0069305	-	4094	-	-	- (aa)	-	-
MGP_CASTEiJ_T0069304	-	805	-	MGP_CASTEiJ_P0069304	268 (aa)	-	-
MGP_CASTEiJ_T0069303	-	3236	-	MGP_CASTEiJ_P0069303	728 (aa)	-	Q9R0E2
MGP_CASTEiJ_T0069308	-	358	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0028225's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0028225's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0028225	Plod1	97	60.511	MGP_CASTEiJ_G0029317	Plod3	95	60.511
MGP_CASTEiJ_G0028225	Plod1	99	59.041	MGP_CASTEiJ_G0034126	Plod2	95	60.313