EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0028244 (Gene tree)
Gene ID: -
Gene Symbol: Tardbp
Alias: 1190002A23Rik|C85084|TARDBP|TDP-43|Tdp43
Full Name: TAR DNA binding protein
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 16808 bases
Position: chr4:147790672-147807479
Accession: 2387629
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0069406	RRM_1	PF00076.22	1.2e-26	1	2
MGP_CASTEiJ_P0069406	RRM_1	PF00076.22	1.2e-26	2	2
MGP_CASTEiJ_P0069399	RRM_1	PF00076.22	4.5e-26	1	2
MGP_CASTEiJ_P0069399	RRM_1	PF00076.22	4.5e-26	2	2
MGP_CASTEiJ_P0069381	RRM_1	PF00076.22	4.6e-26	1	2
MGP_CASTEiJ_P0069381	RRM_1	PF00076.22	4.6e-26	2	2
MGP_CASTEiJ_P0069403	RRM_1	PF00076.22	4.6e-26	1	2
MGP_CASTEiJ_P0069403	RRM_1	PF00076.22	4.6e-26	2	2
MGP_CASTEiJ_P0069384	RRM_1	PF00076.22	4.9e-26	1	2
MGP_CASTEiJ_P0069384	RRM_1	PF00076.22	4.9e-26	2	2
MGP_CASTEiJ_P0069405	RRM_1	PF00076.22	4.9e-26	1	2
MGP_CASTEiJ_P0069405	RRM_1	PF00076.22	4.9e-26	2	2
MGP_CASTEiJ_P0069382	RRM_1	PF00076.22	5e-26	1	2
MGP_CASTEiJ_P0069382	RRM_1	PF00076.22	5e-26	2	2
MGP_CASTEiJ_P0069404	RRM_1	PF00076.22	5e-26	1	2
MGP_CASTEiJ_P0069404	RRM_1	PF00076.22	5e-26	2	2
MGP_CASTEiJ_P0069383	RRM_1	PF00076.22	1.2e-25	1	2
MGP_CASTEiJ_P0069383	RRM_1	PF00076.22	1.2e-25	2	2
MGP_CASTEiJ_P0069408	RRM_1	PF00076.22	4.1e-15	1	1
MGP_CASTEiJ_P0069409	RRM_1	PF00076.22	5e-11	1	1
MGP_CASTEiJ_P0069400	RRM_1	PF00076.22	6.7e-09	1	1
MGP_CASTEiJ_P0069402	RRM_1	PF00076.22	3.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0069408	-	818	-	MGP_CASTEiJ_P0069408	243 (aa)	-	-
MGP_CASTEiJ_T0069409	-	740	-	MGP_CASTEiJ_P0069409	149 (aa)	-	-
MGP_CASTEiJ_T0069400	-	570	-	MGP_CASTEiJ_P0069400	128 (aa)	-	-
MGP_CASTEiJ_T0069401	-	814	-	MGP_CASTEiJ_P0069401	19 (aa)	-	-
MGP_CASTEiJ_T0069402	-	748	-	MGP_CASTEiJ_P0069402	84 (aa)	-	-
MGP_CASTEiJ_T0069403	-	1096	-	MGP_CASTEiJ_P0069403	298 (aa)	-	-
MGP_CASTEiJ_T0069404	-	923	-	MGP_CASTEiJ_P0069404	302 (aa)	-	-
MGP_CASTEiJ_T0069405	-	1011	-	MGP_CASTEiJ_P0069405	304 (aa)	-	-
MGP_CASTEiJ_T0069406	-	709	-	MGP_CASTEiJ_P0069406	199 (aa)	-	-
MGP_CASTEiJ_T0069407	-	1411	-	MGP_CASTEiJ_P0069407	84 (aa)	-	-
MGP_CASTEiJ_T0069398	-	517	-	MGP_CASTEiJ_P0069398	77 (aa)	-	-
MGP_CASTEiJ_T0069399	-	1904	-	MGP_CASTEiJ_P0069399	295 (aa)	-	-
MGP_CASTEiJ_T0069394	-	741	-	MGP_CASTEiJ_P0069394	175 (aa)	-	-
MGP_CASTEiJ_T0069395	-	781	-	MGP_CASTEiJ_P0069395	140 (aa)	-	-
MGP_CASTEiJ_T0069396	-	1304	-	MGP_CASTEiJ_P0069396	285 (aa)	-	-
MGP_CASTEiJ_T0069397	-	684	-	MGP_CASTEiJ_P0069397	137 (aa)	-	-
MGP_CASTEiJ_T0069390	-	629	-	-	- (aa)	-	-
MGP_CASTEiJ_T0069391	-	358	-	-	- (aa)	-	-
MGP_CASTEiJ_T0069392	-	2006	-	MGP_CASTEiJ_P0069392	298 (aa)	-	-
MGP_CASTEiJ_T0069393	-	1011	-	MGP_CASTEiJ_P0069393	34 (aa)	-	-
MGP_CASTEiJ_T0069410	-	370	-	-	- (aa)	-	-
MGP_CASTEiJ_T0069389	-	908	-	-	- (aa)	-	-
MGP_CASTEiJ_T0069388	-	676	-	MGP_CASTEiJ_P0069388	88 (aa)	-	-
MGP_CASTEiJ_T0069387	-	529	-	MGP_CASTEiJ_P0069387	98 (aa)	-	-
MGP_CASTEiJ_T0069386	-	731	-	-	- (aa)	-	-
MGP_CASTEiJ_T0069385	-	1773	-	MGP_CASTEiJ_P0069385	298 (aa)	-	-
MGP_CASTEiJ_T0069384	-	6514	-	MGP_CASTEiJ_P0069384	304 (aa)	-	-
MGP_CASTEiJ_T0069383	-	7478	-	MGP_CASTEiJ_P0069383	414 (aa)	-	-
MGP_CASTEiJ_T0069382	-	6426	-	MGP_CASTEiJ_P0069382	302 (aa)	-	-
MGP_CASTEiJ_T0069381	-	6496	XM_011250237	MGP_CASTEiJ_P0069381	298 (aa)	XP_011248539	Q921F2

Gene Model

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Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0028244's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0028244	Tardbp	77	38.194	MGP_CASTEiJ_G0028890	Hnrnpd	75	51.389
MGP_CASTEiJ_G0028244	Tardbp	77	31.447	MGP_CASTEiJ_G0028892	Hnrnpdl	64	30.000
MGP_CASTEiJ_G0028244	Tardbp	79	34.021	MGP_CASTEiJ_G0029073	Msi1	62	34.021
MGP_CASTEiJ_G0028244	Tardbp	79	31.818	MGP_CASTEiJ_G0018234	Msi2	100	35.398
MGP_CASTEiJ_G0028244	Tardbp	88	31.818	MGP_CASTEiJ_G0016822	-	89	35.065
MGP_CASTEiJ_G0028244	Tardbp	92	35.000	MGP_CASTEiJ_G0034713	Rbmx	78	35.000
MGP_CASTEiJ_G0028244	Tardbp	94	30.282	MGP_CASTEiJ_G0029831	Hnrnpa2b1	72	31.250
MGP_CASTEiJ_G0028244	Tardbp	86	33.146	MGP_CASTEiJ_G0017584	Hnrnpab	82	32.099