EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0028296 (Gene tree)
Gene ID: -
Gene Symbol: Chd5
Alias: 4930532L22Rik|AW060752|B230399N07Rik|CHD-5|Kiaa0444
Full Name: chromodomain helicase DNA binding protein 5
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 54920 bases
Position: chr4:151886551-151941470
Accession: 3036258
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0069711	ResIII	PF04851.15	2.5e-07	1	1
MGP_CASTEiJ_P0069713	ResIII	PF04851.15	2.5e-07	1	1
MGP_CASTEiJ_P0069712	ResIII	PF04851.15	2.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0069711	-	9353	XM_006538929	MGP_CASTEiJ_P0069711	1915 (aa)	XP_006538992	A2A8L1
MGP_CASTEiJ_T0069712	-	9464	-	MGP_CASTEiJ_P0069712	1952 (aa)	-	-
MGP_CASTEiJ_T0069713	-	9100	-	MGP_CASTEiJ_P0069713	1946 (aa)	-	-
MGP_CASTEiJ_T0069714	-	4631	-	MGP_CASTEiJ_P0069714	1466 (aa)	-	-
MGP_CASTEiJ_T0069715	-	280	-	-	- (aa)	-	-
MGP_CASTEiJ_T0069716	-	6224	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0028296's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0028296's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0028296	Chd5	91	73.153	MGP_CASTEiJ_G0030367	Chd4	96	72.421
MGP_CASTEiJ_G0028296	Chd5	51	34.657	MGP_CASTEiJ_G0025989	Chd6	66	36.621
MGP_CASTEiJ_G0028296	Chd5	97	70.165	MGP_CASTEiJ_G0017837	Chd3	95	71.313