EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0028890 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpd
Alias: Auf1|Hnrpd
Full Name: heterogeneous nuclear ribonucleoprotein D
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 24365 bases
Position: chr5:99838912-99863276
Accession: 101947
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0072981	CBFNT	PF08143.11	1.5e-11	1	1
MGP_CASTEiJ_P0072988	CBFNT	PF08143.11	5.8e-08	1	1
MGP_CASTEiJ_P0072983	CBFNT	PF08143.11	4.3e-07	1	1
MGP_CASTEiJ_P0072982	CBFNT	PF08143.11	5.7e-07	1	1
MGP_CASTEiJ_P0072980	CBFNT	PF08143.11	7.2e-06	1	1
MGP_CASTEiJ_P0072988	RRM_1	PF00076.22	3.8e-36	1	2
MGP_CASTEiJ_P0072988	RRM_1	PF00076.22	3.8e-36	2	2
MGP_CASTEiJ_P0072983	RRM_1	PF00076.22	7e-36	1	2
MGP_CASTEiJ_P0072983	RRM_1	PF00076.22	7e-36	2	2
MGP_CASTEiJ_P0072981	RRM_1	PF00076.22	9.1e-36	1	2
MGP_CASTEiJ_P0072981	RRM_1	PF00076.22	9.1e-36	2	2
MGP_CASTEiJ_P0072982	RRM_1	PF00076.22	1.1e-35	1	2
MGP_CASTEiJ_P0072982	RRM_1	PF00076.22	1.1e-35	2	2
MGP_CASTEiJ_P0072980	RRM_1	PF00076.22	1.3e-35	1	2
MGP_CASTEiJ_P0072980	RRM_1	PF00076.22	1.3e-35	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0072989	-	425	-	-	- (aa)	-	-
MGP_CASTEiJ_T0072988	-	672	-	MGP_CASTEiJ_P0072988	223 (aa)	-	-
MGP_CASTEiJ_T0072981	-	1997	-	MGP_CASTEiJ_P0072981	305 (aa)	-	-
MGP_CASTEiJ_T0072980	-	6668	XM_006534735	MGP_CASTEiJ_P0072980	348 (aa)	XP_006534798	Q60668
MGP_CASTEiJ_T0072983	-	1515	-	MGP_CASTEiJ_P0072983	280 (aa)	-	-
MGP_CASTEiJ_T0072982	-	1648	-	MGP_CASTEiJ_P0072982	329 (aa)	-	-
MGP_CASTEiJ_T0072985	-	737	-	MGP_CASTEiJ_P0072985	150 (aa)	-	-
MGP_CASTEiJ_T0072984	-	1116	-	MGP_CASTEiJ_P0072984	215 (aa)	-	-
MGP_CASTEiJ_T0072987	-	1083	-	MGP_CASTEiJ_P0072987	79 (aa)	-	-
MGP_CASTEiJ_T0072986	-	699	-	MGP_CASTEiJ_P0072986	131 (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0028890's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0028890's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0028890	Hnrnpd	75	51.389	MGP_CASTEiJ_G0028244	Tardbp	77	38.194
MGP_CASTEiJ_G0028890	Hnrnpd	64	37.931	MGP_CASTEiJ_G0034524	Rbm3	78	37.931
MGP_CASTEiJ_G0028890	Hnrnpd	87	58.025	MGP_CASTEiJ_G0018234	Msi2	100	53.982
MGP_CASTEiJ_G0028890	Hnrnpd	97	70.616	MGP_CASTEiJ_G0017584	Hnrnpab	88	62.799
MGP_CASTEiJ_G0028890	Hnrnpd	53	32.099	MGP_CASTEiJ_G0015387	Boll	61	31.818
MGP_CASTEiJ_G0028890	Hnrnpd	77	36.257	MGP_CASTEiJ_G0019890	Hnrnpa0	73	39.474
MGP_CASTEiJ_G0028890	Hnrnpd	80	72.674	MGP_CASTEiJ_G0028892	Hnrnpdl	89	64.236
MGP_CASTEiJ_G0028890	Hnrnpd	89	44.162	MGP_CASTEiJ_G0029073	Msi1	59	46.043
MGP_CASTEiJ_G0028890	Hnrnpd	83	41.053	MGP_CASTEiJ_G0029831	Hnrnpa2b1	87	36.744
MGP_CASTEiJ_G0028890	Hnrnpd	68	37.931	MGP_CASTEiJ_G0016816	Cirbp	86	37.931
MGP_CASTEiJ_G0028890	Hnrnpd	91	37.333	MGP_CASTEiJ_G0016822	-	99	39.521
MGP_CASTEiJ_G0028890	Hnrnpd	65	40.000	MGP_CASTEiJ_G0034713	Rbmx	85	43.750