EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0028956 (Gene tree)
Gene ID: -
Gene Symbol: Gfi1
Alias: AW495828|Gfi-1|Pal-1|Pal1
Full Name: growth factor independent 1
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 9404 bases
Position: chr5:108345810-108355213
Accession: 103170
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0073278	zf-C2H2	PF00096.26	5.1e-28	1	6
MGP_CASTEiJ_P0073278	zf-C2H2	PF00096.26	5.1e-28	2	6
MGP_CASTEiJ_P0073278	zf-C2H2	PF00096.26	5.1e-28	3	6
MGP_CASTEiJ_P0073278	zf-C2H2	PF00096.26	5.1e-28	4	6
MGP_CASTEiJ_P0073278	zf-C2H2	PF00096.26	5.1e-28	5	6
MGP_CASTEiJ_P0073278	zf-C2H2	PF00096.26	5.1e-28	6	6
MGP_CASTEiJ_P0073279	zf-C2H2	PF00096.26	5.1e-28	1	6
MGP_CASTEiJ_P0073279	zf-C2H2	PF00096.26	5.1e-28	2	6
MGP_CASTEiJ_P0073279	zf-C2H2	PF00096.26	5.1e-28	3	6
MGP_CASTEiJ_P0073279	zf-C2H2	PF00096.26	5.1e-28	4	6
MGP_CASTEiJ_P0073279	zf-C2H2	PF00096.26	5.1e-28	5	6
MGP_CASTEiJ_P0073279	zf-C2H2	PF00096.26	5.1e-28	6	6
MGP_CASTEiJ_P0073280	zf-C2H2	PF00096.26	1.5e-27	1	6
MGP_CASTEiJ_P0073280	zf-C2H2	PF00096.26	1.5e-27	2	6
MGP_CASTEiJ_P0073280	zf-C2H2	PF00096.26	1.5e-27	3	6
MGP_CASTEiJ_P0073280	zf-C2H2	PF00096.26	1.5e-27	4	6
MGP_CASTEiJ_P0073280	zf-C2H2	PF00096.26	1.5e-27	5	6
MGP_CASTEiJ_P0073280	zf-C2H2	PF00096.26	1.5e-27	6	6
MGP_CASTEiJ_P0073281	zf-C2H2	PF00096.26	9.6e-25	1	4
MGP_CASTEiJ_P0073281	zf-C2H2	PF00096.26	9.6e-25	2	4
MGP_CASTEiJ_P0073281	zf-C2H2	PF00096.26	9.6e-25	3	4
MGP_CASTEiJ_P0073281	zf-C2H2	PF00096.26	9.6e-25	4	4
MGP_CASTEiJ_P0073281	zf-met	PF12874.7	2.3e-08	1	1
MGP_CASTEiJ_P0073278	zf-met	PF12874.7	2.6e-07	1	1
MGP_CASTEiJ_P0073279	zf-met	PF12874.7	2.6e-07	1	1
MGP_CASTEiJ_P0073280	zf-met	PF12874.7	4.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0073281	-	1497	-	MGP_CASTEiJ_P0073281	135 (aa)	-	-
MGP_CASTEiJ_T0073280	-	2654	-	MGP_CASTEiJ_P0073280	489 (aa)	-	-
MGP_CASTEiJ_T0073282	-	689	-	MGP_CASTEiJ_P0073282	186 (aa)	-	-
MGP_CASTEiJ_T0073278	-	2875	XM_006534791	MGP_CASTEiJ_P0073278	423 (aa)	XP_006534854	A0A0R4J292
MGP_CASTEiJ_T0073279	-	2663	-	MGP_CASTEiJ_P0073279	423 (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0028956's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0028956's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0028956	Gfi1	99	45.714	MGP_CASTEiJ_G0030898	Zfp574	61	43.925
MGP_CASTEiJ_G0028956	Gfi1	100	46.457	MGP_CASTEiJ_G0033155	Zfp1	60	43.478
MGP_CASTEiJ_G0028956	Gfi1	100	47.368	MGP_CASTEiJ_G0026106	Zfp64	70	38.298
MGP_CASTEiJ_G0028956	Gfi1	100	46.457	MGP_CASTEiJ_G0030869	Zfp94	65	44.970
MGP_CASTEiJ_G0028956	Gfi1	100	50.427	MGP_CASTEiJ_G0030866	Zfp108	70	45.000
MGP_CASTEiJ_G0028956	Gfi1	100	43.846	MGP_CASTEiJ_G0019963	Zfp759	90	42.857
MGP_CASTEiJ_G0028956	Gfi1	100	54.321	MGP_CASTEiJ_G0032059	Zfp768	51	45.517
MGP_CASTEiJ_G0028956	Gfi1	100	45.312	MGP_CASTEiJ_G0022465	Zfp677	79	43.195
MGP_CASTEiJ_G0028956	Gfi1	100	45.238	MGP_CASTEiJ_G0017709	-	79	43.023
MGP_CASTEiJ_G0028956	Gfi1	99	47.287	MGP_CASTEiJ_G0029798	Repin1	90	47.287
MGP_CASTEiJ_G0028956	Gfi1	100	47.761	MGP_CASTEiJ_G0030867	Zfp93	70	47.761
MGP_CASTEiJ_G0028956	Gfi1	99	45.133	MGP_CASTEiJ_G0029924	Prdm5	74	41.463
MGP_CASTEiJ_G0028956	Gfi1	100	49.219	MGP_CASTEiJ_G0028615	Zbtb49	62	51.786
MGP_CASTEiJ_G0028956	Gfi1	100	47.863	MGP_CASTEiJ_G0026068	Zfp334	65	47.651
MGP_CASTEiJ_G0028956	Gfi1	99	44.275	MGP_CASTEiJ_G0032062	-	66	42.775
MGP_CASTEiJ_G0028956	Gfi1	99	44.275	MGP_CASTEiJ_G0032061	-	66	42.775
MGP_CASTEiJ_G0028956	Gfi1	99	44.275	MGP_CASTEiJ_G0032063	-	66	42.775
MGP_CASTEiJ_G0028956	Gfi1	100	50.746	MGP_CASTEiJ_G0033422	Zfp26	67	47.159
MGP_CASTEiJ_G0028956	Gfi1	100	48.031	MGP_CASTEiJ_G0019982	Zfp748	93	48.447
MGP_CASTEiJ_G0028956	Gfi1	100	50.000	MGP_CASTEiJ_G0019986	-	93	50.000
MGP_CASTEiJ_G0028956	Gfi1	100	43.590	MGP_CASTEiJ_G0030265	Zfp637	71	43.590
MGP_CASTEiJ_G0028956	Gfi1	100	49.254	MGP_CASTEiJ_G0021271	Zfp251	66	49.254
MGP_CASTEiJ_G0028956	Gfi1	100	48.507	MGP_CASTEiJ_G0031027	Zfp420	98	48.031
MGP_CASTEiJ_G0028956	Gfi1	100	44.444	MGP_CASTEiJ_G0033485	Zfp872	79	43.396
MGP_CASTEiJ_G0028956	Gfi1	100	45.794	MGP_CASTEiJ_G0017568	Zfp454	85	42.262
MGP_CASTEiJ_G0028956	Gfi1	100	45.522	MGP_CASTEiJ_G0022467	Zfp51	75	44.828
MGP_CASTEiJ_G0028956	Gfi1	100	45.522	MGP_CASTEiJ_G0032778	Zfp709	81	43.976
MGP_CASTEiJ_G0028956	Gfi1	99	44.444	MGP_CASTEiJ_G0030646	Zfp784	71	44.444
MGP_CASTEiJ_G0028956	Gfi1	99	47.368	MGP_CASTEiJ_G0030643	Zfp865	63	47.368
MGP_CASTEiJ_G0028956	Gfi1	100	51.282	MGP_CASTEiJ_G0019990	Zfp493	57	51.282
MGP_CASTEiJ_G0028956	Gfi1	100	42.857	MGP_CASTEiJ_G0022489	Zscan10	77	42.771
MGP_CASTEiJ_G0028956	Gfi1	100	44.882	MGP_CASTEiJ_G0031153	Zfp715	63	43.210
MGP_CASTEiJ_G0028956	Gfi1	100	47.788	MGP_CASTEiJ_G0019962	Rslcan18	71	47.788
MGP_CASTEiJ_G0028956	Gfi1	100	46.739	MGP_CASTEiJ_G0023809	Zfp236	68	48.148
MGP_CASTEiJ_G0028956	Gfi1	100	39.535	MGP_CASTEiJ_G0033000	Zfp319	93	40.116
MGP_CASTEiJ_G0028956	Gfi1	100	48.413	MGP_CASTEiJ_G0030966	Zfp59	80	48.413
MGP_CASTEiJ_G0028956	Gfi1	99	48.507	MGP_CASTEiJ_G0025643	Zfp661	62	48.507
MGP_CASTEiJ_G0028956	Gfi1	100	48.276	MGP_CASTEiJ_G0017666	Zfp672	90	48.276
MGP_CASTEiJ_G0028956	Gfi1	100	46.094	MGP_CASTEiJ_G0032779	Zfp882	85	46.094