EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0029073 (Gene tree)
Gene ID: -
Gene Symbol: Msi1
Alias: Msi1|Msi1h|Musahi1|m-Msi-1
Full Name: musashi RNA-binding protein 1
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 31566 bases
Position: chr5:116681390-116712955
Accession: 107376
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0073883	RRM_1	PF00076.22	7e-33	1	2
MGP_CASTEiJ_P0073883	RRM_1	PF00076.22	7e-33	2	2
MGP_CASTEiJ_P0073884	RRM_1	PF00076.22	1.6e-28	1	2
MGP_CASTEiJ_P0073884	RRM_1	PF00076.22	1.6e-28	2	2
MGP_CASTEiJ_P0073888	RRM_1	PF00076.22	1.3e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0073889	-	599	-	-	- (aa)	-	-
MGP_CASTEiJ_T0073888	-	726	-	MGP_CASTEiJ_P0073888	196 (aa)	-	-
MGP_CASTEiJ_T0073883	-	3013	-	MGP_CASTEiJ_P0073883	362 (aa)	-	-
MGP_CASTEiJ_T0073882	-	2622	-	-	- (aa)	-	-
MGP_CASTEiJ_T0073887	-	581	-	-	- (aa)	-	-
MGP_CASTEiJ_T0073886	-	806	-	-	- (aa)	-	-
MGP_CASTEiJ_T0073885	-	367	-	-	- (aa)	-	-
MGP_CASTEiJ_T0073884	-	807	-	MGP_CASTEiJ_P0073884	268 (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0029073's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0029073's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0029073	Msi1	56	41.379	MGP_CASTEiJ_G0032110	Tial1	69	31.469
MGP_CASTEiJ_G0029073	Msi1	61	43.750	MGP_CASTEiJ_G0029831	Hnrnpa2b1	91	41.379
MGP_CASTEiJ_G0029073	Msi1	99	75.665	MGP_CASTEiJ_G0018234	Msi2	100	90.323
MGP_CASTEiJ_G0029073	Msi1	61	51.064	MGP_CASTEiJ_G0026128	Rbm38	66	46.809
MGP_CASTEiJ_G0029073	Msi1	62	34.021	MGP_CASTEiJ_G0028244	Tardbp	79	34.021
MGP_CASTEiJ_G0029073	Msi1	51	38.983	MGP_CASTEiJ_G0016816	Cirbp	87	40.351
MGP_CASTEiJ_G0029073	Msi1	59	46.043	MGP_CASTEiJ_G0028890	Hnrnpd	89	44.162
MGP_CASTEiJ_G0029073	Msi1	57	42.949	MGP_CASTEiJ_G0019890	Hnrnpa0	59	43.646
MGP_CASTEiJ_G0029073	Msi1	88	42.308	MGP_CASTEiJ_G0016822	-	98	44.311
MGP_CASTEiJ_G0029073	Msi1	58	48.052	MGP_CASTEiJ_G0028892	Hnrnpdl	75	39.676
MGP_CASTEiJ_G0029073	Msi1	58	48.052	MGP_CASTEiJ_G0017584	Hnrnpab	79	40.800