EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0029200 (Gene tree)
Gene ID: -
Gene Symbol: Snrnp35
Alias: 6330548G22Rik|U1snrnpbp
Full Name: small nuclear ribonucleoprotein 35 (U11/U12)
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 7954 bases
Position: chr5:126645290-126653243
Accession: 1923417
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0074651	RRM_1	PF00076.22	1.1e-16	1	1
MGP_CASTEiJ_P0074650	RRM_1	PF00076.22	1.4e-16	1	1
MGP_CASTEiJ_P0074652	RRM_1	PF00076.22	1.4e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0074652	-	1181	-	MGP_CASTEiJ_P0074652	244 (aa)	-	-
MGP_CASTEiJ_T0074651	-	449	-	MGP_CASTEiJ_P0074651	121 (aa)	-	-
MGP_CASTEiJ_T0074650	-	1115	XM_006530494	MGP_CASTEiJ_P0074650	244 (aa)	XP_006530557	Q9D384

Gene Model

Click here to download MGP_CASTEiJ_G0029200's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0029200's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0029200	Snrnp35	59	33.803	MGP_CASTEiJ_G0027708	Elavl4	57	37.037
MGP_CASTEiJ_G0029200	Snrnp35	64	48.718	MGP_CASTEiJ_G0031252	Snrnp70	70	46.667
MGP_CASTEiJ_G0029200	Snrnp35	60	37.500	MGP_CASTEiJ_G0027579	Elavl2	67	35.714
MGP_CASTEiJ_G0029200	Snrnp35	55	34.848	MGP_CASTEiJ_G0034524	Rbm3	73	33.333
MGP_CASTEiJ_G0029200	Snrnp35	55	36.364	MGP_CASTEiJ_G0034713	Rbmx	71	35.616