EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0029462 (Gene tree)
Gene ID: -
Gene Symbol: Cpsf4
Alias: 30kDa|C79664|Cpsf30
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 15126 bases
Position: chr5:149001640-149016765
Accession: 1861602
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0076020	zf-CCCH	PF00642.24	1.1e-20	1	2
MGP_CASTEiJ_P0076020	zf-CCCH	PF00642.24	1.1e-20	2	2
MGP_CASTEiJ_P0076015	zf-CCCH	PF00642.24	3.1e-20	1	2
MGP_CASTEiJ_P0076015	zf-CCCH	PF00642.24	3.1e-20	2	2
MGP_CASTEiJ_P0076018	zf-CCCH	PF00642.24	3.2e-20	1	2
MGP_CASTEiJ_P0076018	zf-CCCH	PF00642.24	3.2e-20	2	2
MGP_CASTEiJ_P0076017	zf-CCCH	PF00642.24	6e-20	1	2
MGP_CASTEiJ_P0076017	zf-CCCH	PF00642.24	6e-20	2	2
MGP_CASTEiJ_P0076016	zf-CCCH	PF00642.24	2.5e-15	1	2
MGP_CASTEiJ_P0076016	zf-CCCH	PF00642.24	2.5e-15	2	2
MGP_CASTEiJ_P0076016	zf-CCHC	PF00098.23	5.7e-06	1	1
MGP_CASTEiJ_P0076015	zf-CCHC	PF00098.23	6.8e-06	1	1
MGP_CASTEiJ_P0076018	zf-CCHC	PF00098.23	6.8e-06	1	1
MGP_CASTEiJ_P0076017	zf-CCHC	PF00098.23	7.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0076019	-	1216	-	MGP_CASTEiJ_P0076019	62 (aa)	-	-
MGP_CASTEiJ_T0076018	-	1396	-	MGP_CASTEiJ_P0076018	244 (aa)	-	-
MGP_CASTEiJ_T0076017	-	1765	-	MGP_CASTEiJ_P0076017	269 (aa)	-	-
MGP_CASTEiJ_T0076016	-	1615	-	MGP_CASTEiJ_P0076016	211 (aa)	-	-
MGP_CASTEiJ_T0076015	-	1722	XM_006504845	MGP_CASTEiJ_P0076015	243 (aa)	XP_006504908	Q8BQZ5
MGP_CASTEiJ_T0076021	-	2979	-	-	- (aa)	-	-
MGP_CASTEiJ_T0076020	-	847	-	MGP_CASTEiJ_P0076020	207 (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0029462's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0029462's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0029462	Cpsf4	86	52.358	MGP_CASTEiJ_G0018658	Cpsf4l	82	62.400