EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0029479 (Gene tree)
Gene ID: -
Gene Symbol: Gtf3a
Alias: 2010015D03Rik|2610111I01Rik|5330403M05Rik
Full Name: general transcription factor III A
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 6934 bases
Position: chr5:151116056-151122989
Accession: 1913846
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0076084	zf-C2H2	PF00096.26	1.2e-33	1	5
MGP_CASTEiJ_P0076084	zf-C2H2	PF00096.26	1.2e-33	2	5
MGP_CASTEiJ_P0076084	zf-C2H2	PF00096.26	1.2e-33	3	5
MGP_CASTEiJ_P0076084	zf-C2H2	PF00096.26	1.2e-33	4	5
MGP_CASTEiJ_P0076084	zf-C2H2	PF00096.26	1.2e-33	5	5
MGP_CASTEiJ_P0076082	zf-C2H2	PF00096.26	2.4e-33	1	5
MGP_CASTEiJ_P0076082	zf-C2H2	PF00096.26	2.4e-33	2	5
MGP_CASTEiJ_P0076082	zf-C2H2	PF00096.26	2.4e-33	3	5
MGP_CASTEiJ_P0076082	zf-C2H2	PF00096.26	2.4e-33	4	5
MGP_CASTEiJ_P0076082	zf-C2H2	PF00096.26	2.4e-33	5	5
MGP_CASTEiJ_P0076084	zf-met	PF12874.7	0.00041	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0076084	-	1427	-	MGP_CASTEiJ_P0076084	342 (aa)	-	-
MGP_CASTEiJ_T0076085	-	1682	-	-	- (aa)	-	-
MGP_CASTEiJ_T0076082	-	1298	-	MGP_CASTEiJ_P0076082	364 (aa)	-	F6RCF6
MGP_CASTEiJ_T0076083	-	1971	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0029479's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0029479's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0029479	Gtf3a	85	30.347	MGP_CASTEiJ_G0032061	-	59	34.722
MGP_CASTEiJ_G0029479	Gtf3a	85	30.347	MGP_CASTEiJ_G0032062	-	59	34.722
MGP_CASTEiJ_G0029479	Gtf3a	85	30.347	MGP_CASTEiJ_G0032063	-	59	34.722
MGP_CASTEiJ_G0029479	Gtf3a	86	37.190	MGP_CASTEiJ_G0025412	Wt1	50	34.286