EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0029575 (Gene tree)
Gene ID: -
Gene Symbol: Lsm8
Alias: 2010003I05Rik|AW214405|Lsm8|Naa38
Full Name: LSM8 homolog%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 7150 bases
Position: chr6:15829640-15836789
Accession: 1923772
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0076640	LSM	PF01423.22	4.5e-19	1	1
MGP_CASTEiJ_P0076643	LSM	PF01423.22	2.4e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0076642	-	889	-	-	- (aa)	-	-
MGP_CASTEiJ_T0076643	-	503	-	MGP_CASTEiJ_P0076643	100 (aa)	-	-
MGP_CASTEiJ_T0076640	-	806	-	MGP_CASTEiJ_P0076640	96 (aa)	-	Q6ZWM4
MGP_CASTEiJ_T0076641	-	3270	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0029575's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0029575's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0029575	Lsm8	73	35.526	MGP_CASTEiJ_G0016854	-	72	35.526
MGP_CASTEiJ_G0029575	Lsm8	92	34.091	MGP_CASTEiJ_G0032504	Lsm1	65	34.091