EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0029924 (Gene tree)
Gene ID: -
Gene Symbol: Prdm5
Alias: 4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2
Full Name: PR domain containing 5
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 169092 bases
Position: chr6:65110040-65279131
Accession: 1918029
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0078108	zf-C2H2	PF00096.26	5.8e-59	1	9
MGP_CASTEiJ_P0078108	zf-C2H2	PF00096.26	5.8e-59	2	9
MGP_CASTEiJ_P0078108	zf-C2H2	PF00096.26	5.8e-59	3	9
MGP_CASTEiJ_P0078108	zf-C2H2	PF00096.26	5.8e-59	4	9
MGP_CASTEiJ_P0078108	zf-C2H2	PF00096.26	5.8e-59	5	9
MGP_CASTEiJ_P0078108	zf-C2H2	PF00096.26	5.8e-59	6	9
MGP_CASTEiJ_P0078108	zf-C2H2	PF00096.26	5.8e-59	7	9
MGP_CASTEiJ_P0078108	zf-C2H2	PF00096.26	5.8e-59	8	9
MGP_CASTEiJ_P0078108	zf-C2H2	PF00096.26	5.8e-59	9	9
MGP_CASTEiJ_P0078103	zf-C2H2	PF00096.26	1e-58	1	9
MGP_CASTEiJ_P0078103	zf-C2H2	PF00096.26	1e-58	2	9
MGP_CASTEiJ_P0078103	zf-C2H2	PF00096.26	1e-58	3	9
MGP_CASTEiJ_P0078103	zf-C2H2	PF00096.26	1e-58	4	9
MGP_CASTEiJ_P0078103	zf-C2H2	PF00096.26	1e-58	5	9
MGP_CASTEiJ_P0078103	zf-C2H2	PF00096.26	1e-58	6	9
MGP_CASTEiJ_P0078103	zf-C2H2	PF00096.26	1e-58	7	9
MGP_CASTEiJ_P0078103	zf-C2H2	PF00096.26	1e-58	8	9
MGP_CASTEiJ_P0078103	zf-C2H2	PF00096.26	1e-58	9	9
MGP_CASTEiJ_P0078106	zf-C2H2	PF00096.26	1.1e-48	1	9
MGP_CASTEiJ_P0078106	zf-C2H2	PF00096.26	1.1e-48	2	9
MGP_CASTEiJ_P0078106	zf-C2H2	PF00096.26	1.1e-48	3	9
MGP_CASTEiJ_P0078106	zf-C2H2	PF00096.26	1.1e-48	4	9
MGP_CASTEiJ_P0078106	zf-C2H2	PF00096.26	1.1e-48	5	9
MGP_CASTEiJ_P0078106	zf-C2H2	PF00096.26	1.1e-48	6	9
MGP_CASTEiJ_P0078106	zf-C2H2	PF00096.26	1.1e-48	7	9
MGP_CASTEiJ_P0078106	zf-C2H2	PF00096.26	1.1e-48	8	9
MGP_CASTEiJ_P0078106	zf-C2H2	PF00096.26	1.1e-48	9	9
MGP_CASTEiJ_P0078105	zf-C2H2	PF00096.26	8.3e-27	1	5
MGP_CASTEiJ_P0078105	zf-C2H2	PF00096.26	8.3e-27	2	5
MGP_CASTEiJ_P0078105	zf-C2H2	PF00096.26	8.3e-27	3	5
MGP_CASTEiJ_P0078105	zf-C2H2	PF00096.26	8.3e-27	4	5
MGP_CASTEiJ_P0078105	zf-C2H2	PF00096.26	8.3e-27	5	5
MGP_CASTEiJ_P0078108	zf-met	PF12874.7	1.6e-20	1	3
MGP_CASTEiJ_P0078108	zf-met	PF12874.7	1.6e-20	2	3
MGP_CASTEiJ_P0078108	zf-met	PF12874.7	1.6e-20	3	3
MGP_CASTEiJ_P0078103	zf-met	PF12874.7	2.7e-20	1	3
MGP_CASTEiJ_P0078103	zf-met	PF12874.7	2.7e-20	2	3
MGP_CASTEiJ_P0078103	zf-met	PF12874.7	2.7e-20	3	3
MGP_CASTEiJ_P0078106	zf-met	PF12874.7	9e-17	1	3
MGP_CASTEiJ_P0078106	zf-met	PF12874.7	9e-17	2	3
MGP_CASTEiJ_P0078106	zf-met	PF12874.7	9e-17	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0078109	-	1917	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078108	-	1740	-	MGP_CASTEiJ_P0078108	579 (aa)	-	-
MGP_CASTEiJ_T0078107	-	4163	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078106	-	1487	-	MGP_CASTEiJ_P0078106	415 (aa)	-	-
MGP_CASTEiJ_T0078105	-	983	-	MGP_CASTEiJ_P0078105	221 (aa)	-	-
MGP_CASTEiJ_T0078104	-	1939	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078103	-	2154	XM_006506600	MGP_CASTEiJ_P0078103	599 (aa)	XP_006506663	Q9CXE0

Gene Model

Click here to download MGP_CASTEiJ_G0029924's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0029924's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0029924	Prdm5	88	42.857	MGP_CASTEiJ_G0017666	Zfp672	86	44.286
MGP_CASTEiJ_G0029924	Prdm5	69	48.571	MGP_CASTEiJ_G0033238	Snai3	55	42.446
MGP_CASTEiJ_G0029924	Prdm5	84	32.735	MGP_CASTEiJ_G0030643	Zfp865	78	32.895
MGP_CASTEiJ_G0029924	Prdm5	77	44.048	MGP_CASTEiJ_G0030265	Zfp637	83	45.775
MGP_CASTEiJ_G0029924	Prdm5	83	38.926	MGP_CASTEiJ_G0019963	Zfp759	94	38.926
MGP_CASTEiJ_G0029924	Prdm5	84	43.277	MGP_CASTEiJ_G0019962	Rslcan18	71	39.200
MGP_CASTEiJ_G0029924	Prdm5	74	37.452	MGP_CASTEiJ_G0032061	-	71	37.452
MGP_CASTEiJ_G0029924	Prdm5	74	37.452	MGP_CASTEiJ_G0032063	-	71	37.452
MGP_CASTEiJ_G0029924	Prdm5	74	37.452	MGP_CASTEiJ_G0032062	-	71	37.452
MGP_CASTEiJ_G0029924	Prdm5	74	40.260	MGP_CASTEiJ_G0030966	Zfp59	89	40.260
MGP_CASTEiJ_G0029924	Prdm5	68	47.826	MGP_CASTEiJ_G0030868	Zfp61	54	41.525
MGP_CASTEiJ_G0029924	Prdm5	93	36.842	MGP_CASTEiJ_G0030866	Zfp108	68	37.269
MGP_CASTEiJ_G0029924	Prdm5	74	48.913	MGP_CASTEiJ_G0030869	Zfp94	72	48.913
MGP_CASTEiJ_G0029924	Prdm5	73	38.610	MGP_CASTEiJ_G0030867	Zfp93	74	38.610
MGP_CASTEiJ_G0029924	Prdm5	95	43.220	MGP_CASTEiJ_G0022465	Zfp677	78	36.027
MGP_CASTEiJ_G0029924	Prdm5	97	39.286	MGP_CASTEiJ_G0022467	Zfp51	98	39.286
MGP_CASTEiJ_G0029924	Prdm5	81	45.802	MGP_CASTEiJ_G0019986	-	95	39.867
MGP_CASTEiJ_G0029924	Prdm5	84	35.678	MGP_CASTEiJ_G0019982	Zfp748	93	39.799
MGP_CASTEiJ_G0029924	Prdm5	81	42.941	MGP_CASTEiJ_G0025643	Zfp661	65	42.941
MGP_CASTEiJ_G0029924	Prdm5	93	46.067	MGP_CASTEiJ_G0026068	Zfp334	67	40.000
MGP_CASTEiJ_G0029924	Prdm5	72	48.760	MGP_CASTEiJ_G0031153	Zfp715	64	39.333
MGP_CASTEiJ_G0029924	Prdm5	69	47.857	MGP_CASTEiJ_G0030861	Zfp112	68	39.711
MGP_CASTEiJ_G0029924	Prdm5	90	42.609	MGP_CASTEiJ_G0032779	Zfp882	94	35.714
MGP_CASTEiJ_G0029924	Prdm5	74	40.000	MGP_CASTEiJ_G0032778	Zfp709	80	40.000
MGP_CASTEiJ_G0029924	Prdm5	68	42.361	MGP_CASTEiJ_G0029798	Repin1	84	42.069
MGP_CASTEiJ_G0029924	Prdm5	79	40.244	MGP_CASTEiJ_G0028615	Zbtb49	96	45.070
MGP_CASTEiJ_G0029924	Prdm5	70	48.315	MGP_CASTEiJ_G0022483	Zfp945	77	48.315
MGP_CASTEiJ_G0029924	Prdm5	90	35.235	MGP_CASTEiJ_G0022489	Zscan10	79	35.235
MGP_CASTEiJ_G0029924	Prdm5	74	41.463	MGP_CASTEiJ_G0028956	Gfi1	99	45.133
MGP_CASTEiJ_G0029924	Prdm5	86	46.739	MGP_CASTEiJ_G0023809	Zfp236	77	43.860
MGP_CASTEiJ_G0029924	Prdm5	78	38.571	MGP_CASTEiJ_G0017568	Zfp454	86	38.571
MGP_CASTEiJ_G0029924	Prdm5	91	39.062	MGP_CASTEiJ_G0021271	Zfp251	88	39.062
MGP_CASTEiJ_G0029924	Prdm5	73	40.562	MGP_CASTEiJ_G0032059	Zfp768	53	43.571
MGP_CASTEiJ_G0029924	Prdm5	84	36.545	MGP_CASTEiJ_G0017709	-	94	36.545
MGP_CASTEiJ_G0029924	Prdm5	78	47.826	MGP_CASTEiJ_G0019561	Zkscan4	53	47.826
MGP_CASTEiJ_G0029924	Prdm5	61	45.045	MGP_CASTEiJ_G0025412	Wt1	55	40.876
MGP_CASTEiJ_G0029924	Prdm5	67	50.847	MGP_CASTEiJ_G0033155	Zfp1	68	40.167
MGP_CASTEiJ_G0029924	Prdm5	67	46.667	MGP_CASTEiJ_G0030898	Zfp574	85	30.051
MGP_CASTEiJ_G0029924	Prdm5	76	49.451	MGP_CASTEiJ_G0033422	Zfp26	78	42.231
MGP_CASTEiJ_G0029924	Prdm5	91	48.387	MGP_CASTEiJ_G0031027	Zfp420	95	41.722
MGP_CASTEiJ_G0029924	Prdm5	78	34.752	MGP_CASTEiJ_G0033000	Zfp319	88	34.602
MGP_CASTEiJ_G0029924	Prdm5	75	34.545	MGP_CASTEiJ_G0026106	Zfp64	69	31.561
MGP_CASTEiJ_G0029924	Prdm5	74	40.104	MGP_CASTEiJ_G0030635	Zfp628	60	40.994
MGP_CASTEiJ_G0029924	Prdm5	78	37.755	MGP_CASTEiJ_G0033485	Zfp872	97	35.933