EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0029955 (Gene tree)
Gene ID: -
Gene Symbol: Polr1a
Alias: 194kDa|3010014K16Rik|RPA194|Rpa1|Rpo1-4|mRPA1
Full Name: polymerase (RNA) I polypeptide A
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 72488 bases
Position: chr6:71523883-71596370
Accession: 1096397
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0078246	RNA_pol_Rpb1_5	PF04998.17	6.6e-103	1	1
MGP_CASTEiJ_P0078246	RNA_pol_Rpb1_4	PF05000.17	1.5e-25	1	1
MGP_CASTEiJ_P0078246	RNA_pol_Rpb1_2	PF00623.20	3.5e-70	1	1
MGP_CASTEiJ_P0078246	RNA_pol_Rpb1_3	PF04983.18	9.1e-37	1	1
MGP_CASTEiJ_P0078246	RNA_pol_Rpb1_1	PF04997.12	2.7e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0078248	-	3302	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078249	-	356	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078253	-	554	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078252	-	625	-	MGP_CASTEiJ_P0078252	47 (aa)	-	-
MGP_CASTEiJ_T0078251	-	584	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078250	-	352	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078245	-	3394	-	MGP_CASTEiJ_P0078245	282 (aa)	-	O35134
MGP_CASTEiJ_T0078246	-	9227	-	MGP_CASTEiJ_P0078246	1717 (aa)	-	-
MGP_CASTEiJ_T0078247	-	1492	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078254	-	4572	-	MGP_CASTEiJ_P0078254	742 (aa)	-	-

Gene Model

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Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0029955's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0029955	Polr1a	68	31.876	MGP_CASTEiJ_G0020323	Polr3a	77	32.623
MGP_CASTEiJ_G0029955	Polr1a	69	33.333	MGP_CASTEiJ_G0017859	Polr2a	51	37.143