EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0030063 (Gene tree)
Gene ID: -
Gene Symbol: Tia1
Alias: 2310050N03Rik|AI256674|TIA-1|Tia|mTIA-1
Full Name: cytotoxic granule-associated RNA binding protein 1
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 30408 bases
Position: chr6:86815111-86845518
Accession: 107914
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0078782	RRM_1	PF00076.22	4.6e-68	1	3
MGP_CASTEiJ_P0078782	RRM_1	PF00076.22	4.6e-68	2	3
MGP_CASTEiJ_P0078782	RRM_1	PF00076.22	4.6e-68	3	3
MGP_CASTEiJ_P0078776	RRM_1	PF00076.22	1.9e-67	1	3
MGP_CASTEiJ_P0078776	RRM_1	PF00076.22	1.9e-67	2	3
MGP_CASTEiJ_P0078776	RRM_1	PF00076.22	1.9e-67	3	3
MGP_CASTEiJ_P0078769	RRM_1	PF00076.22	2.2e-67	1	3
MGP_CASTEiJ_P0078769	RRM_1	PF00076.22	2.2e-67	2	3
MGP_CASTEiJ_P0078769	RRM_1	PF00076.22	2.2e-67	3	3
MGP_CASTEiJ_P0078768	RRM_1	PF00076.22	2.2e-67	1	3
MGP_CASTEiJ_P0078768	RRM_1	PF00076.22	2.2e-67	2	3
MGP_CASTEiJ_P0078768	RRM_1	PF00076.22	2.2e-67	3	3
MGP_CASTEiJ_P0078777	RRM_1	PF00076.22	2.3e-58	1	3
MGP_CASTEiJ_P0078777	RRM_1	PF00076.22	2.3e-58	2	3
MGP_CASTEiJ_P0078777	RRM_1	PF00076.22	2.3e-58	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0078792	-	2568	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078781	-	1178	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078780	-	4326	-	MGP_CASTEiJ_P0078780	212 (aa)	-	-
MGP_CASTEiJ_T0078783	-	864	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078782	-	3107	-	MGP_CASTEiJ_P0078782	377 (aa)	-	-
MGP_CASTEiJ_T0078785	-	1890	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078784	-	823	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078787	-	706	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078786	-	2649	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078789	-	758	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078788	-	750	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078793	-	716	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078769	-	1789	-	MGP_CASTEiJ_P0078769	385 (aa)	-	-
MGP_CASTEiJ_T0078768	-	4477	XM_006505889	MGP_CASTEiJ_P0078768	386 (aa)	XP_006505952	P52912
MGP_CASTEiJ_T0078794	-	585	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078795	-	597	-	MGP_CASTEiJ_P0078795	105 (aa)	-	-
MGP_CASTEiJ_T0078778	-	1290	-	MGP_CASTEiJ_P0078778	93 (aa)	-	-
MGP_CASTEiJ_T0078779	-	797	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078790	-	627	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078791	-	877	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078774	-	1203	-	MGP_CASTEiJ_P0078774	133 (aa)	-	-
MGP_CASTEiJ_T0078775	-	3854	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078776	-	3129	-	MGP_CASTEiJ_P0078776	375 (aa)	-	-
MGP_CASTEiJ_T0078777	-	1444	-	MGP_CASTEiJ_P0078777	285 (aa)	-	-
MGP_CASTEiJ_T0078770	-	933	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078771	-	422	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078772	-	4397	-	-	- (aa)	-	-
MGP_CASTEiJ_T0078773	-	612	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0030063's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0030063's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0030063	Tia1	60	31.285	MGP_CASTEiJ_G0027997	Trnau1ap	79	30.198
MGP_CASTEiJ_G0030063	Tia1	95	30.189	MGP_CASTEiJ_G0021054	Pabpc1	55	38.095
MGP_CASTEiJ_G0030063	Tia1	95	30.000	MGP_CASTEiJ_G0026358	Pabpc4l	95	30.539
MGP_CASTEiJ_G0030063	Tia1	87	38.095	MGP_CASTEiJ_G0026012	Pabpc1l	59	38.095
MGP_CASTEiJ_G0030063	Tia1	97	86.992	MGP_CASTEiJ_G0032110	Tial1	100	87.440
MGP_CASTEiJ_G0030063	Tia1	80	37.778	MGP_CASTEiJ_G0016816	Cirbp	91	35.714
MGP_CASTEiJ_G0030063	Tia1	96	36.905	MGP_CASTEiJ_G0022384	Pabpc6	58	36.905
MGP_CASTEiJ_G0030063	Tia1	70	41.333	MGP_CASTEiJ_G0034524	Rbm3	99	35.955
MGP_CASTEiJ_G0030063	Tia1	77	35.870	MGP_CASTEiJ_G0026783	Rbm8a	54	35.870
MGP_CASTEiJ_G0030063	Tia1	98	32.895	MGP_CASTEiJ_G0027708	Elavl4	94	35.897
MGP_CASTEiJ_G0030063	Tia1	95	33.835	MGP_CASTEiJ_G0023577	Pabpc2	57	35.443
MGP_CASTEiJ_G0030063	Tia1	95	33.333	MGP_CASTEiJ_G0027867	Pabpc4	98	39.394
MGP_CASTEiJ_G0030063	Tia1	80	34.043	MGP_CASTEiJ_G0034713	Rbmx	98	34.409
MGP_CASTEiJ_G0030063	Tia1	78	36.000	MGP_CASTEiJ_G0021985	Ncbp2	51	36.000
MGP_CASTEiJ_G0030063	Tia1	73	34.146	MGP_CASTEiJ_G0016187	Rbm8a2	55	34.783
MGP_CASTEiJ_G0030063	Tia1	83	35.443	MGP_CASTEiJ_G0024528	Celf2	51	35.443
MGP_CASTEiJ_G0030063	Tia1	88	34.568	MGP_CASTEiJ_G0016890	Celf5	89	32.184
MGP_CASTEiJ_G0030063	Tia1	87	32.911	MGP_CASTEiJ_G0023416	Celf4	63	30.682
MGP_CASTEiJ_G0030063	Tia1	85	36.000	MGP_CASTEiJ_G0033906	Celf6	62	32.955
MGP_CASTEiJ_G0030063	Tia1	78	32.787	MGP_CASTEiJ_G0024960	Rbms1	62	32.558
MGP_CASTEiJ_G0030063	Tia1	98	31.169	MGP_CASTEiJ_G0033478	Elavl3	90	37.179
MGP_CASTEiJ_G0030063	Tia1	89	34.615	MGP_CASTEiJ_G0027579	Elavl2	96	34.615
MGP_CASTEiJ_G0030063	Tia1	93	38.667	MGP_CASTEiJ_G0026707	Celf3	77	37.805
MGP_CASTEiJ_G0030063	Tia1	84	34.247	MGP_CASTEiJ_G0035010	Pabpc5	93	33.333