EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0030485 (Gene tree)
Gene ID: -
Gene Symbol: Ddx47
Alias: 4930588A18Rik|C77285
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 13232 bases
Position: chr6:137374502-137387733
Accession: 1915005
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0080797	ResIII	PF04851.15	1.1e-05	1	1
MGP_CASTEiJ_P0080789	ResIII	PF04851.15	1.5e-05	1	1
MGP_CASTEiJ_P0080797	DEAD	PF00270.29	1.8e-48	1	1
MGP_CASTEiJ_P0080789	DEAD	PF00270.29	2.8e-48	1	1
MGP_CASTEiJ_P0080796	DEAD	PF00270.29	4.4e-38	1	2
MGP_CASTEiJ_P0080796	DEAD	PF00270.29	4.4e-38	2	2
MGP_CASTEiJ_P0080791	DEAD	PF00270.29	1.1e-21	1	1
MGP_CASTEiJ_P0080794	DEAD	PF00270.29	3.1e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0080791	-	607	-	MGP_CASTEiJ_P0080791	196 (aa)	-	-
MGP_CASTEiJ_T0080790	-	435	-	MGP_CASTEiJ_P0080790	138 (aa)	-	-
MGP_CASTEiJ_T0080793	-	4008	-	-	- (aa)	-	-
MGP_CASTEiJ_T0080792	-	978	-	-	- (aa)	-	-
MGP_CASTEiJ_T0080795	-	620	-	-	- (aa)	-	-
MGP_CASTEiJ_T0080794	-	551	-	MGP_CASTEiJ_P0080794	180 (aa)	-	-
MGP_CASTEiJ_T0080797	-	1078	-	MGP_CASTEiJ_P0080797	359 (aa)	-	-
MGP_CASTEiJ_T0080796	-	1139	-	MGP_CASTEiJ_P0080796	379 (aa)	-	-
MGP_CASTEiJ_T0080799	-	791	-	-	- (aa)	-	-
MGP_CASTEiJ_T0080798	-	693	-	-	- (aa)	-	-
MGP_CASTEiJ_T0080789	-	1764	-	MGP_CASTEiJ_P0080789	455 (aa)	-	Q9CWX9
MGP_CASTEiJ_T0080800	-	3028	-	MGP_CASTEiJ_P0080800	61 (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0030485's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0030485's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0030485	Ddx47	96	30.491	MGP_CASTEiJ_G0018781	Eif4a3	94	31.783
MGP_CASTEiJ_G0030485	Ddx47	91	34.218	MGP_CASTEiJ_G0034068	Ddx43	57	36.412
MGP_CASTEiJ_G0030485	Ddx47	70	49.398	MGP_CASTEiJ_G0033086	Ddx28	72	33.079
MGP_CASTEiJ_G0030485	Ddx47	85	33.333	MGP_CASTEiJ_G0019865	Ddx41	58	35.556
MGP_CASTEiJ_G0030485	Ddx47	81	35.977	MGP_CASTEiJ_G0029202	Ddx55	58	35.977
MGP_CASTEiJ_G0030485	Ddx47	52	35.714	MGP_CASTEiJ_G0033144	-	61	31.126
MGP_CASTEiJ_G0030485	Ddx47	93	34.015	MGP_CASTEiJ_G0020197	Ddx4	56	34.527
MGP_CASTEiJ_G0030485	Ddx47	68	35.739	MGP_CASTEiJ_G0018617	-	71	37.457
MGP_CASTEiJ_G0030485	Ddx47	86	38.889	MGP_CASTEiJ_G0017334	Ddx56	99	35.887
MGP_CASTEiJ_G0030485	Ddx47	96	33.455	MGP_CASTEiJ_G0024730	Ddx31	67	30.851
MGP_CASTEiJ_G0030485	Ddx47	91	31.806	MGP_CASTEiJ_G0015890	Ddx59	60	33.602
MGP_CASTEiJ_G0030485	Ddx47	86	46.875	MGP_CASTEiJ_G0018908	Ddx1	60	46.875
MGP_CASTEiJ_G0030485	Ddx47	85	36.869	MGP_CASTEiJ_G0021336	Ddx17	57	37.374
MGP_CASTEiJ_G0030485	Ddx47	88	37.705	MGP_CASTEiJ_G0015762	Ddx18	55	38.525
MGP_CASTEiJ_G0030485	Ddx47	86	33.690	MGP_CASTEiJ_G0016265	D1Pas1	57	34.759
MGP_CASTEiJ_G0030485	Ddx47	94	30.175	MGP_CASTEiJ_G0016635	Ddx50	61	30.676
MGP_CASTEiJ_G0030485	Ddx47	95	45.824	MGP_CASTEiJ_G0032713	Ddx49	97	49.271
MGP_CASTEiJ_G0030485	Ddx47	86	33.690	MGP_CASTEiJ_G0034550	Ddx3x	56	34.492
MGP_CASTEiJ_G0030485	Ddx47	90	31.926	MGP_CASTEiJ_G0022856	Ddx39b	99	36.486
MGP_CASTEiJ_G0030485	Ddx47	90	32.095	MGP_CASTEiJ_G0032855	Ddx39	89	32.620
MGP_CASTEiJ_G0030485	Ddx47	83	32.011	MGP_CASTEiJ_G0018172	Ddx52	58	33.428
MGP_CASTEiJ_G0030485	Ddx47	93	31.759	MGP_CASTEiJ_G0033719	Ddx6	78	32.987
MGP_CASTEiJ_G0030485	Ddx47	94	30.548	MGP_CASTEiJ_G0021938	Eif4a2	94	32.637