EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0030942 (Gene tree)
Gene ID: -
Gene Symbol: Snrpa
Alias: C430021M15Rik|Rnu1a-1|Rnu1a1|U1 snRNP|U1-A|U1A
Full Name: small nuclear ribonucleoprotein polypeptide A
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 10401 bases
Position: chr7:19546317-19556717
Accession: 1855690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0082594	RRM_5	PF13893.6	4.9e-07	1	2
MGP_CASTEiJ_P0082594	RRM_5	PF13893.6	4.9e-07	2	2
MGP_CASTEiJ_P0082595	RRM_5	PF13893.6	4.9e-07	1	2
MGP_CASTEiJ_P0082595	RRM_5	PF13893.6	4.9e-07	2	2
MGP_CASTEiJ_P0082596	RRM_5	PF13893.6	4.9e-07	1	2
MGP_CASTEiJ_P0082596	RRM_5	PF13893.6	4.9e-07	2	2
MGP_CASTEiJ_P0082594	RRM_1	PF00076.22	4.6e-28	1	2
MGP_CASTEiJ_P0082594	RRM_1	PF00076.22	4.6e-28	2	2
MGP_CASTEiJ_P0082595	RRM_1	PF00076.22	4.6e-28	1	2
MGP_CASTEiJ_P0082595	RRM_1	PF00076.22	4.6e-28	2	2
MGP_CASTEiJ_P0082596	RRM_1	PF00076.22	4.6e-28	1	2
MGP_CASTEiJ_P0082596	RRM_1	PF00076.22	4.6e-28	2	2
MGP_CASTEiJ_P0082597	RRM_1	PF00076.22	1.1e-18	1	2
MGP_CASTEiJ_P0082597	RRM_1	PF00076.22	1.1e-18	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0082599	-	1690	-	-	- (aa)	-	-
MGP_CASTEiJ_T0082598	-	510	-	MGP_CASTEiJ_P0082598	44 (aa)	-	-
MGP_CASTEiJ_T0082593	-	413	-	-	- (aa)	-	-
MGP_CASTEiJ_T0082595	-	1336	-	MGP_CASTEiJ_P0082595	287 (aa)	-	-
MGP_CASTEiJ_T0082594	-	1288	-	MGP_CASTEiJ_P0082594	287 (aa)	-	-
MGP_CASTEiJ_T0082597	-	968	-	MGP_CASTEiJ_P0082597	247 (aa)	-	-
MGP_CASTEiJ_T0082596	-	1365	-	MGP_CASTEiJ_P0082596	287 (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0030942's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0030942's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0030942	Snrpa	98	87.544	MGP_CASTEiJ_G0034178	Gm5145	100	87.544
MGP_CASTEiJ_G0030942	Snrpa	97	55.235	MGP_CASTEiJ_G0025754	Snrpb2	99	63.121