EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0031001 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpl
Alias: C79783|D830027H13Rik|Hnrpl
Full Name: heterogeneous nuclear ribonucleoprotein L
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 13455 bases
Position: chr7:21348684-21362138
Accession: 104816
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0082820	RRM_5	PF13893.6	2.4e-60	1	2
MGP_CASTEiJ_P0082820	RRM_5	PF13893.6	2.4e-60	2	2
MGP_CASTEiJ_P0082824	RRM_5	PF13893.6	2.4e-60	1	2
MGP_CASTEiJ_P0082824	RRM_5	PF13893.6	2.4e-60	2	2
MGP_CASTEiJ_P0082825	RRM_5	PF13893.6	3e-60	1	2
MGP_CASTEiJ_P0082825	RRM_5	PF13893.6	3e-60	2	2
MGP_CASTEiJ_P0082822	RRM_5	PF13893.6	2e-59	1	2
MGP_CASTEiJ_P0082822	RRM_5	PF13893.6	2e-59	2	2
MGP_CASTEiJ_P0082820	RRM_1	PF00076.22	3.3e-22	1	2
MGP_CASTEiJ_P0082820	RRM_1	PF00076.22	3.3e-22	2	2
MGP_CASTEiJ_P0082824	RRM_1	PF00076.22	3.3e-22	1	2
MGP_CASTEiJ_P0082824	RRM_1	PF00076.22	3.3e-22	2	2
MGP_CASTEiJ_P0082825	RRM_1	PF00076.22	4.3e-22	1	2
MGP_CASTEiJ_P0082825	RRM_1	PF00076.22	4.3e-22	2	2
MGP_CASTEiJ_P0082822	RRM_1	PF00076.22	1.7e-16	1	1
MGP_CASTEiJ_P0082823	RRM_1	PF00076.22	1.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0082829	-	637	-	-	- (aa)	-	-
MGP_CASTEiJ_T0082828	-	504	-	-	- (aa)	-	-
MGP_CASTEiJ_T0082821	-	2273	-	-	- (aa)	-	-
MGP_CASTEiJ_T0082820	-	2675	XM_006539556	MGP_CASTEiJ_P0082820	586 (aa)	XP_006539619	Q8R081
MGP_CASTEiJ_T0082823	-	502	-	MGP_CASTEiJ_P0082823	112 (aa)	-	-
MGP_CASTEiJ_T0082822	-	1894	-	MGP_CASTEiJ_P0082822	456 (aa)	-	-
MGP_CASTEiJ_T0082825	-	2176	-	MGP_CASTEiJ_P0082825	614 (aa)	-	-
MGP_CASTEiJ_T0082824	-	2138	-	MGP_CASTEiJ_P0082824	586 (aa)	-	-
MGP_CASTEiJ_T0082827	-	1846	-	MGP_CASTEiJ_P0082827	201 (aa)	-	-
MGP_CASTEiJ_T0082826	-	2424	-	-	- (aa)	-	-
MGP_CASTEiJ_T0082830	-	1087	-	-	- (aa)	-	-
MGP_CASTEiJ_T0082831	-	767	-	-	- (aa)	-	-
MGP_CASTEiJ_T0082832	-	668	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0031001's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0031001's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0031001	Hnrnpl	55	36.207	MGP_CASTEiJ_G0027475	Ptbp3	83	35.537
MGP_CASTEiJ_G0031001	Hnrnpl	100	63.393	MGP_CASTEiJ_G0023258	Hnrnpll	79	58.065
MGP_CASTEiJ_G0031001	Hnrnpl	93	30.097	MGP_CASTEiJ_G0026983	Ptbp2	77	32.273