EuRBPDB

Description

Ensembl ID: MGP_CASTEiJ_G0031252 (Gene tree)
Gene ID: -
Gene Symbol: Snrnp70
Alias: 2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Snrp70 {ECO:0000313|EMBL:EDL22845.1,GN ECO:0000313|MGI:MGI:98341}|Srnp70|U1-70|U1-70K
Full Name: small nuclear ribonucleoprotein 70 (U1)
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 23653 bases
Position: chr7:37886930-37910582
Accession: 98341
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0083910	RRM_1	PF00076.22	1.1e-17	1	1
MGP_CASTEiJ_P0083920	RRM_1	PF00076.22	4.1e-13	1	1
MGP_CASTEiJ_P0083912	RRM_1	PF00076.22	2.2e-08	1	1
MGP_CASTEiJ_P0083922	U1snRNP70_N	PF12220.8	5.7e-29	1	1
MGP_CASTEiJ_P0083920	U1snRNP70_N	PF12220.8	1.5e-28	1	1
MGP_CASTEiJ_P0083910	U1snRNP70_N	PF12220.8	2e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0083923	-	212	-	-	- (aa)	-	-
MGP_CASTEiJ_T0083922	-	620	-	MGP_CASTEiJ_P0083922	109 (aa)	-	-
MGP_CASTEiJ_T0083921	-	605	-	-	- (aa)	-	-
MGP_CASTEiJ_T0083920	-	618	-	MGP_CASTEiJ_P0083920	168 (aa)	-	-
MGP_CASTEiJ_T0083925	-	579	-	-	- (aa)	-	-
MGP_CASTEiJ_T0083924	-	1901	-	-	- (aa)	-	-
MGP_CASTEiJ_T0083916	-	2924	-	-	- (aa)	-	-
MGP_CASTEiJ_T0083917	-	733	-	-	- (aa)	-	-
MGP_CASTEiJ_T0083914	-	3035	-	-	- (aa)	-	-
MGP_CASTEiJ_T0083915	-	707	-	MGP_CASTEiJ_P0083915	115 (aa)	-	-
MGP_CASTEiJ_T0083912	-	451	-	MGP_CASTEiJ_P0083912	86 (aa)	-	-
MGP_CASTEiJ_T0083913	-	4008	-	-	- (aa)	-	-
MGP_CASTEiJ_T0083910	-	1735	XM_006540732	MGP_CASTEiJ_P0083910	448 (aa)	XP_006540795	Q62376
MGP_CASTEiJ_T0083911	-	1252	-	MGP_CASTEiJ_P0083911	356 (aa)	-	-
MGP_CASTEiJ_T0083918	-	620	-	-	- (aa)	-	-
MGP_CASTEiJ_T0083919	-	616	-	MGP_CASTEiJ_P0083919	111 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0031252	Snrnp70	52	35.000	MGP_CASTEiJ_G0015387	Boll	58	32.911
MGP_CASTEiJ_G0031252	Snrnp70	70	46.667	MGP_CASTEiJ_G0029200	Snrnp35	64	48.718