EuRBPDB

Description

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0087139	RRM_1	PF00076.22	2.2e-63	1	3
MGP_CASTEiJ_P0087139	RRM_1	PF00076.22	2.2e-63	2	3
MGP_CASTEiJ_P0087139	RRM_1	PF00076.22	2.2e-63	3	3
MGP_CASTEiJ_P0087141	RRM_1	PF00076.22	2.2e-63	1	3
MGP_CASTEiJ_P0087141	RRM_1	PF00076.22	2.2e-63	2	3
MGP_CASTEiJ_P0087141	RRM_1	PF00076.22	2.2e-63	3	3
MGP_CASTEiJ_P0087136	RRM_1	PF00076.22	3.2e-60	1	3
MGP_CASTEiJ_P0087136	RRM_1	PF00076.22	3.2e-60	2	3
MGP_CASTEiJ_P0087136	RRM_1	PF00076.22	3.2e-60	3	3
MGP_CASTEiJ_P0087138	RRM_1	PF00076.22	7.7e-51	1	3
MGP_CASTEiJ_P0087138	RRM_1	PF00076.22	7.7e-51	2	3
MGP_CASTEiJ_P0087138	RRM_1	PF00076.22	7.7e-51	3	3
MGP_CASTEiJ_P0087144	RRM_1	PF00076.22	1.8e-26	1	2
MGP_CASTEiJ_P0087144	RRM_1	PF00076.22	1.8e-26	2	2
MGP_CASTEiJ_P0087143	RRM_1	PF00076.22	2.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0087148	-	674	-	-	- (aa)	-	-
MGP_CASTEiJ_T0087141	-	1580	-	MGP_CASTEiJ_P0087141	375 (aa)	-	-
MGP_CASTEiJ_T0087140	-	953	-	MGP_CASTEiJ_P0087140	106 (aa)	-	-
MGP_CASTEiJ_T0087143	-	562	-	MGP_CASTEiJ_P0087143	107 (aa)	-	-
MGP_CASTEiJ_T0087142	-	2322	-	MGP_CASTEiJ_P0087142	135 (aa)	-	-
MGP_CASTEiJ_T0087145	-	784	-	MGP_CASTEiJ_P0087145	41 (aa)	-	-
MGP_CASTEiJ_T0087144	-	1344	-	MGP_CASTEiJ_P0087144	244 (aa)	-	-
MGP_CASTEiJ_T0087147	-	804	-	MGP_CASTEiJ_P0087147	140 (aa)	-	-
MGP_CASTEiJ_T0087146	-	560	-	-	- (aa)	-	-
MGP_CASTEiJ_T0087138	-	2835	-	MGP_CASTEiJ_P0087138	336 (aa)	-	-
MGP_CASTEiJ_T0087139	-	2033	-	MGP_CASTEiJ_P0087139	375 (aa)	-	-
MGP_CASTEiJ_T0087136	-	4453	XM_006507570	MGP_CASTEiJ_P0087136	392 (aa)	XP_006507633	P70318
MGP_CASTEiJ_T0087137	-	4268	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0032110	Tial1	99	31.618	MGP_CASTEiJ_G0026358	Pabpc4l	94	33.333
MGP_CASTEiJ_G0032110	Tial1	92	33.750	MGP_CASTEiJ_G0023577	Pabpc2	50	35.036
MGP_CASTEiJ_G0032110	Tial1	65	31.481	MGP_CASTEiJ_G0024528	Celf2	61	34.177
MGP_CASTEiJ_G0032110	Tial1	73	32.000	MGP_CASTEiJ_G0026493	Rbm46	52	30.000
MGP_CASTEiJ_G0032110	Tial1	81	37.333	MGP_CASTEiJ_G0026707	Celf3	70	34.091
MGP_CASTEiJ_G0032110	Tial1	53	32.143	MGP_CASTEiJ_G0033906	Celf6	54	31.818
MGP_CASTEiJ_G0032110	Tial1	69	31.469	MGP_CASTEiJ_G0029073	Msi1	56	41.379
MGP_CASTEiJ_G0032110	Tial1	73	37.179	MGP_CASTEiJ_G0033478	Elavl3	90	37.179
MGP_CASTEiJ_G0032110	Tial1	81	31.111	MGP_CASTEiJ_G0018773	Rbfox3	53	31.868
MGP_CASTEiJ_G0032110	Tial1	94	30.233	MGP_CASTEiJ_G0027867	Pabpc4	98	34.167
MGP_CASTEiJ_G0032110	Tial1	100	87.440	MGP_CASTEiJ_G0030063	Tia1	97	86.992
MGP_CASTEiJ_G0032110	Tial1	94	31.783	MGP_CASTEiJ_G0022384	Pabpc6	56	34.014
MGP_CASTEiJ_G0032110	Tial1	72	34.615	MGP_CASTEiJ_G0027579	Elavl2	93	34.615
MGP_CASTEiJ_G0032110	Tial1	62	32.184	MGP_CASTEiJ_G0021985	Ncbp2	71	33.333
MGP_CASTEiJ_G0032110	Tial1	73	33.019	MGP_CASTEiJ_G0027997	Trnau1ap	60	32.386
MGP_CASTEiJ_G0032110	Tial1	73	35.897	MGP_CASTEiJ_G0027708	Elavl4	88	35.897
MGP_CASTEiJ_G0032110	Tial1	94	31.008	MGP_CASTEiJ_G0021054	Pabpc1	56	35.000
MGP_CASTEiJ_G0032110	Tial1	64	31.461	MGP_CASTEiJ_G0034713	Rbmx	90	32.258
MGP_CASTEiJ_G0032110	Tial1	73	32.099	MGP_CASTEiJ_G0027214	-	55	30.579
MGP_CASTEiJ_G0032110	Tial1	67	40.244	MGP_CASTEiJ_G0016816	Cirbp	85	40.244