EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0032855 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39
Alias: 2610307C23Rik|BAT1|DDXL|Ddx39a|URH49
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 11741 bases
Position: chr8:83678319-83690059
Accession: 1915528
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0089730	ResIII	PF04851.15	3.1e-05	1	1
MGP_CASTEiJ_P0089733	ResIII	PF04851.15	3.1e-05	1	1
MGP_CASTEiJ_P0089734	ResIII	PF04851.15	3.1e-05	1	1
MGP_CASTEiJ_P0089730	DEAD	PF00270.29	4.2e-38	1	1
MGP_CASTEiJ_P0089733	DEAD	PF00270.29	4.2e-38	1	1
MGP_CASTEiJ_P0089734	DEAD	PF00270.29	4.2e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0089730	-	1656	XM_006531332	MGP_CASTEiJ_P0089730	427 (aa)	XP_006531395	Q8VDW0
MGP_CASTEiJ_T0089731	-	1927	-	-	- (aa)	-	-
MGP_CASTEiJ_T0089732	-	1551	-	MGP_CASTEiJ_P0089732	208 (aa)	-	-
MGP_CASTEiJ_T0089733	-	3864	-	MGP_CASTEiJ_P0089733	427 (aa)	-	-
MGP_CASTEiJ_T0089734	-	1794	-	MGP_CASTEiJ_P0089734	427 (aa)	-	-
MGP_CASTEiJ_T0089735	-	754	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0032855's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0032855's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0032855	Ddx39	90	34.074	MGP_CASTEiJ_G0026876	Ddx20	50	34.140
MGP_CASTEiJ_G0032855	Ddx39	70	33.784	MGP_CASTEiJ_G0033144	-	59	33.784
MGP_CASTEiJ_G0032855	Ddx39	90	31.095	MGP_CASTEiJ_G0033143	Ddx19a	81	31.095
MGP_CASTEiJ_G0032855	Ddx39	74	34.969	MGP_CASTEiJ_G0017334	Ddx56	61	32.051
MGP_CASTEiJ_G0032855	Ddx39	90	30.392	MGP_CASTEiJ_G0034550	Ddx3x	56	31.565
MGP_CASTEiJ_G0032855	Ddx39	81	30.312	MGP_CASTEiJ_G0015762	Ddx18	51	31.085
MGP_CASTEiJ_G0032855	Ddx39	96	34.223	MGP_CASTEiJ_G0033719	Ddx6	82	34.750
MGP_CASTEiJ_G0032855	Ddx39	89	32.620	MGP_CASTEiJ_G0030485	Ddx47	90	32.095
MGP_CASTEiJ_G0032855	Ddx39	90	30.392	MGP_CASTEiJ_G0016265	D1Pas1	57	31.565
MGP_CASTEiJ_G0032855	Ddx39	86	36.119	MGP_CASTEiJ_G0018781	Eif4a3	88	36.119
MGP_CASTEiJ_G0032855	Ddx39	86	38.108	MGP_CASTEiJ_G0021938	Eif4a2	90	38.108
MGP_CASTEiJ_G0032855	Ddx39	85	31.183	MGP_CASTEiJ_G0033540	Ddx25	81	31.328
MGP_CASTEiJ_G0032855	Ddx39	100	90.654	MGP_CASTEiJ_G0022856	Ddx39b	100	90.654
MGP_CASTEiJ_G0032855	Ddx39	87	33.156	MGP_CASTEiJ_G0032713	Ddx49	97	33.333