EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0033238 (Gene tree)
Gene ID: -
Gene Symbol: Snai3
Alias: AI643946|Smuc|Snail-related gene from muscle cells|Zfp293
Full Name: snail family zinc finger 3
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 6479 bases
Position: chr8:125076336-125082814
Accession: 1353563
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0090945	zf-C2H2	PF00096.26	3.1e-24	1	4
MGP_CASTEiJ_P0090945	zf-C2H2	PF00096.26	3.1e-24	2	4
MGP_CASTEiJ_P0090945	zf-C2H2	PF00096.26	3.1e-24	3	4
MGP_CASTEiJ_P0090945	zf-C2H2	PF00096.26	3.1e-24	4	4
MGP_CASTEiJ_P0090945	zf-met	PF12874.7	3.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0090945	-	1589	XM_006531074	MGP_CASTEiJ_P0090945	287 (aa)	XP_006531137	Q9QY31

Gene Model

Click here to download MGP_CASTEiJ_G0033238's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0033238's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0033238	Snai3	55	42.446	MGP_CASTEiJ_G0029924	Prdm5	69	48.571
MGP_CASTEiJ_G0033238	Snai3	100	40.667	MGP_CASTEiJ_G0026091	Snai1	99	41.333
MGP_CASTEiJ_G0033238	Snai3	67	47.297	MGP_CASTEiJ_G0023809	Zfp236	57	36.242
MGP_CASTEiJ_G0033238	Snai3	59	40.000	MGP_CASTEiJ_G0017666	Zfp672	90	40.000
MGP_CASTEiJ_G0033238	Snai3	99	46.552	MGP_CASTEiJ_G0021808	Snai2	99	46.599