EuRBPDB

Description

Ensembl ID: MGP_CASTEiJ_G0033478 (Gene tree)
Gene ID: -
Gene Symbol: Elavl3
Alias: 2600009P04Rik|Huc|PLE21|mHuC
Full Name: ELAV (embryonic lethal%2C abnormal vision%2C Drosophila)-like 3 (Hu antigen C)
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 39715 bases
Position: chr9:19425260-19464974
Accession: 109157
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0091641	RRM_5	PF13893.6	4.2e-13	1	2
MGP_CASTEiJ_P0091641	RRM_5	PF13893.6	4.2e-13	2	2
MGP_CASTEiJ_P0091641	RRM_1	PF00076.22	5.5e-64	1	3
MGP_CASTEiJ_P0091641	RRM_1	PF00076.22	5.5e-64	2	3
MGP_CASTEiJ_P0091641	RRM_1	PF00076.22	5.5e-64	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0091641	-	5045	XM_006510021	MGP_CASTEiJ_P0091641	367 (aa)	XP_006510084	Q60900
MGP_CASTEiJ_T0091642	-	1014	-	MGP_CASTEiJ_P0091642	337 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0033478	Elavl3	63	37.931	MGP_CASTEiJ_G0034390	Rbms3	70	38.562
MGP_CASTEiJ_G0033478	Elavl3	100	78.400	MGP_CASTEiJ_G0027579	Elavl2	100	79.292
MGP_CASTEiJ_G0033478	Elavl3	70	39.506	MGP_CASTEiJ_G0023416	Celf4	67	39.744
MGP_CASTEiJ_G0033478	Elavl3	90	34.940	MGP_CASTEiJ_G0023577	Pabpc2	61	34.940
MGP_CASTEiJ_G0033478	Elavl3	92	36.145	MGP_CASTEiJ_G0021054	Pabpc1	55	36.145
MGP_CASTEiJ_G0033478	Elavl3	59	30.488	MGP_CASTEiJ_G0026012	Pabpc1l	63	38.889
MGP_CASTEiJ_G0033478	Elavl3	92	36.145	MGP_CASTEiJ_G0022384	Pabpc6	62	36.145
MGP_CASTEiJ_G0033478	Elavl3	90	37.179	MGP_CASTEiJ_G0030063	Tia1	98	31.169
MGP_CASTEiJ_G0033478	Elavl3	80	41.975	MGP_CASTEiJ_G0033906	Celf6	57	42.308
MGP_CASTEiJ_G0033478	Elavl3	77	38.272	MGP_CASTEiJ_G0016890	Celf5	91	31.765
MGP_CASTEiJ_G0033478	Elavl3	58	38.686	MGP_CASTEiJ_G0024960	Rbms1	68	35.000
MGP_CASTEiJ_G0033478	Elavl3	92	33.735	MGP_CASTEiJ_G0027867	Pabpc4	92	31.061
MGP_CASTEiJ_G0033478	Elavl3	90	36.145	MGP_CASTEiJ_G0026358	Pabpc4l	96	36.145
MGP_CASTEiJ_G0033478	Elavl3	69	33.708	MGP_CASTEiJ_G0034713	Rbmx	86	33.708
MGP_CASTEiJ_G0033478	Elavl3	73	40.741	MGP_CASTEiJ_G0024528	Celf2	82	34.667
MGP_CASTEiJ_G0033478	Elavl3	99	80.323	MGP_CASTEiJ_G0027708	Elavl4	99	79.893
MGP_CASTEiJ_G0033478	Elavl3	71	42.391	MGP_CASTEiJ_G0025323	Celf1	57	43.590
MGP_CASTEiJ_G0033478	Elavl3	89	34.940	MGP_CASTEiJ_G0026707	Celf3	98	35.632
MGP_CASTEiJ_G0033478	Elavl3	62	37.500	MGP_CASTEiJ_G0016816	Cirbp	79	37.500
MGP_CASTEiJ_G0033478	Elavl3	90	37.179	MGP_CASTEiJ_G0032110	Tial1	73	37.179