EuRBPDB

Description

Ensembl ID: MGP_CASTEiJ_G0034108 (Gene tree)
Gene ID: -
Gene Symbol: Syncrip
Alias: 2610109K23Rik|4632417O19Rik|GRY-RBP|Hnrpq|Nsap1|Nsap1l|RRM RNA binding protein GRY-RBP|hnRNP Q|pp68
Full Name: synaptotagmin binding%2C cytoplasmic RNA interacting protein
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 40303 bases
Position: chr9:89152223-89192525
Accession: 1891690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0093729	RRM_5	PF13893.6	2.5e-06	1	1
MGP_CASTEiJ_P0093733	RRM_5	PF13893.6	3.3e-06	1	1
MGP_CASTEiJ_P0093730	RRM_5	PF13893.6	4.9e-06	1	1
MGP_CASTEiJ_P0093727	RRM_5	PF13893.6	4.9e-06	1	1
MGP_CASTEiJ_P0093732	RRM_5	PF13893.6	6.3e-06	1	1
MGP_CASTEiJ_P0093730	RRM_1	PF00076.22	3.1e-44	1	3
MGP_CASTEiJ_P0093730	RRM_1	PF00076.22	3.1e-44	2	3
MGP_CASTEiJ_P0093730	RRM_1	PF00076.22	3.1e-44	3	3
MGP_CASTEiJ_P0093727	RRM_1	PF00076.22	3.1e-44	1	3
MGP_CASTEiJ_P0093727	RRM_1	PF00076.22	3.1e-44	2	3
MGP_CASTEiJ_P0093727	RRM_1	PF00076.22	3.1e-44	3	3
MGP_CASTEiJ_P0093732	RRM_1	PF00076.22	4.8e-44	1	3
MGP_CASTEiJ_P0093732	RRM_1	PF00076.22	4.8e-44	2	3
MGP_CASTEiJ_P0093732	RRM_1	PF00076.22	4.8e-44	3	3
MGP_CASTEiJ_P0093729	RRM_1	PF00076.22	8.6e-43	1	3
MGP_CASTEiJ_P0093729	RRM_1	PF00076.22	8.6e-43	2	3
MGP_CASTEiJ_P0093729	RRM_1	PF00076.22	8.6e-43	3	3
MGP_CASTEiJ_P0093733	RRM_1	PF00076.22	1.4e-42	1	3
MGP_CASTEiJ_P0093733	RRM_1	PF00076.22	1.4e-42	2	3
MGP_CASTEiJ_P0093733	RRM_1	PF00076.22	1.4e-42	3	3
MGP_CASTEiJ_P0093728	RRM_1	PF00076.22	1.4e-31	1	2
MGP_CASTEiJ_P0093728	RRM_1	PF00076.22	1.4e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0093734	-	549	-	-	- (aa)	-	-
MGP_CASTEiJ_T0093733	-	1767	-	MGP_CASTEiJ_P0093733	588 (aa)	-	-
MGP_CASTEiJ_T0093732	-	2395	-	MGP_CASTEiJ_P0093732	623 (aa)	-	-
MGP_CASTEiJ_T0093731	-	1924	-	MGP_CASTEiJ_P0093731	67 (aa)	-	-
MGP_CASTEiJ_T0093730	-	3403	-	MGP_CASTEiJ_P0093730	561 (aa)	-	-
MGP_CASTEiJ_T0093737	-	426	-	MGP_CASTEiJ_P0093737	94 (aa)	-	-
MGP_CASTEiJ_T0093736	-	2362	-	-	- (aa)	-	-
MGP_CASTEiJ_T0093735	-	766	-	MGP_CASTEiJ_P0093735	196 (aa)	-	-
MGP_CASTEiJ_T0093727	-	9409	XM_006511293	MGP_CASTEiJ_P0093727	562 (aa)	XP_006511356	Q7TMK9
MGP_CASTEiJ_T0093728	-	3173	-	MGP_CASTEiJ_P0093728	448 (aa)	-	-
MGP_CASTEiJ_T0093729	-	3285	-	MGP_CASTEiJ_P0093729	527 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0034108	Syncrip	75	57.522	MGP_CASTEiJ_G0028695	Rbm47	88	58.451
MGP_CASTEiJ_G0034108	Syncrip	58	52.308	MGP_CASTEiJ_G0024240	A1cf	51	53.398
MGP_CASTEiJ_G0034108	Syncrip	53	54.333	MGP_CASTEiJ_G0026493	Rbm46	63	55.000