EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0034136 (Gene tree)
Gene ID: -
Gene Symbol: Xrn1
Alias: Dhm2|exo|mXrn1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 112979 bases
Position: chr9:96171784-96284762
Accession: 891964
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0093867	XRN_N	PF03159.18	3.1e-96	1	1
MGP_CASTEiJ_P0093863	XRN_N	PF03159.18	1.6e-95	1	1
MGP_CASTEiJ_P0093862	XRN_N	PF03159.18	1.6e-95	1	1
MGP_CASTEiJ_P0093864	XRN_N	PF03159.18	9.4e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0093870	-	3033	-	-	- (aa)	-	-
MGP_CASTEiJ_T0093869	-	844	-	-	- (aa)	-	-
MGP_CASTEiJ_T0093868	-	3562	-	-	- (aa)	-	-
MGP_CASTEiJ_T0093867	-	3093	-	MGP_CASTEiJ_P0093867	969 (aa)	-	-
MGP_CASTEiJ_T0093866	-	6237	-	-	- (aa)	-	-
MGP_CASTEiJ_T0093865	-	3346	-	-	- (aa)	-	-
MGP_CASTEiJ_T0093864	-	357	-	MGP_CASTEiJ_P0093864	40 (aa)	-	-
MGP_CASTEiJ_T0093863	-	10286	-	MGP_CASTEiJ_P0093863	1719 (aa)	-	-
MGP_CASTEiJ_T0093862	-	5499	XM_006511153	MGP_CASTEiJ_P0093862	1723 (aa)	XP_006511216	A0A087WNV6

Gene Model

Click here to download MGP_CASTEiJ_G0034136's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0034136's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0034136	Xrn1	90	66.667	MGP_CASTEiJ_G0025781	Xrn2	83	34.483