EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0034226 (Gene tree)
Gene ID: -
Gene Symbol: Pcbp4
Alias: 1200003L19Rik|AlphaCP-4
Full Name: poly(rC) binding protein 4
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 15438 bases
Position: chr9:107264160-107279597
Accession: 1890471
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0094323	KH_1	PF00013.29	3.4e-50	1	3
MGP_CASTEiJ_P0094323	KH_1	PF00013.29	3.4e-50	2	3
MGP_CASTEiJ_P0094323	KH_1	PF00013.29	3.4e-50	3	3
MGP_CASTEiJ_P0094325	KH_1	PF00013.29	2.8e-32	1	2
MGP_CASTEiJ_P0094325	KH_1	PF00013.29	2.8e-32	2	2
MGP_CASTEiJ_P0094332	KH_1	PF00013.29	1.5e-21	1	1
MGP_CASTEiJ_P0094320	KH_1	PF00013.29	1.4e-18	1	1
MGP_CASTEiJ_P0094327	KH_1	PF00013.29	2.3e-15	1	1
MGP_CASTEiJ_P0094329	KH_1	PF00013.29	1.2e-13	1	1
MGP_CASTEiJ_P0094334	KH_1	PF00013.29	5.4e-09	1	1
MGP_CASTEiJ_P0094325	KH_2	PF07650.17	8.5e-12	1	1
MGP_CASTEiJ_P0094320	KH_2	PF07650.17	2.3e-06	1	1
MGP_CASTEiJ_P0094327	KH_2	PF07650.17	0.00015	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0094332	-	770	-	MGP_CASTEiJ_P0094332	168 (aa)	-	-
MGP_CASTEiJ_T0094333	-	314	-	-	- (aa)	-	-
MGP_CASTEiJ_T0094330	-	846	-	MGP_CASTEiJ_P0094330	150 (aa)	-	-
MGP_CASTEiJ_T0094331	-	289	-	-	- (aa)	-	-
MGP_CASTEiJ_T0094329	-	232	-	MGP_CASTEiJ_P0094329	77 (aa)	-	-
MGP_CASTEiJ_T0094328	-	253	-	-	- (aa)	-	-
MGP_CASTEiJ_T0094334	-	924	-	MGP_CASTEiJ_P0094334	215 (aa)	-	-
MGP_CASTEiJ_T0094335	-	450	-	-	- (aa)	-	-
MGP_CASTEiJ_T0094325	-	893	-	MGP_CASTEiJ_P0094325	197 (aa)	-	-
MGP_CASTEiJ_T0094324	-	381	-	-	- (aa)	-	-
MGP_CASTEiJ_T0094327	-	752	-	MGP_CASTEiJ_P0094327	113 (aa)	-	-
MGP_CASTEiJ_T0094326	-	477	-	-	- (aa)	-	-
MGP_CASTEiJ_T0094321	-	389	-	-	- (aa)	-	-
MGP_CASTEiJ_T0094320	-	651	XM_006511779	MGP_CASTEiJ_P0094320	119 (aa)	XP_006511842	A0A087WP16
MGP_CASTEiJ_T0094323	-	1987	-	MGP_CASTEiJ_P0094323	403 (aa)	-	-
MGP_CASTEiJ_T0094322	-	610	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0034226's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0034226's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0034226	Pcbp4	76	32.323	MGP_CASTEiJ_G0023154	Khsrp	54	34.091
MGP_CASTEiJ_G0034226	Pcbp4	98	66.321	MGP_CASTEiJ_G0021674	Pcbp2	97	59.877
MGP_CASTEiJ_G0034226	Pcbp4	84	32.039	MGP_CASTEiJ_G0018302	Igf2bp1	59	30.597
MGP_CASTEiJ_G0034226	Pcbp4	85	31.731	MGP_CASTEiJ_G0021927	Igf2bp2	62	31.111
MGP_CASTEiJ_G0034226	Pcbp4	83	36.000	MGP_CASTEiJ_G0024783	Fubp3	70	36.000
MGP_CASTEiJ_G0034226	Pcbp4	97	67.826	MGP_CASTEiJ_G0030066	Pcbp1	98	53.541
MGP_CASTEiJ_G0034226	Pcbp4	86	33.728	MGP_CASTEiJ_G0019896	Hnrnpk	78	32.414
MGP_CASTEiJ_G0034226	Pcbp4	93	70.652	MGP_CASTEiJ_G0016721	Pcbp3	85	69.811
MGP_CASTEiJ_G0034226	Pcbp4	76	33.684	MGP_CASTEiJ_G0027142	Fubp1	72	34.524
MGP_CASTEiJ_G0034226	Pcbp4	51	37.363	MGP_CASTEiJ_G0019013	Nova1	52	37.363
MGP_CASTEiJ_G0034226	Pcbp4	76	41.538	MGP_CASTEiJ_G0030795	-	54	41.538