EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0034390 (Gene tree)
Gene ID: -
Gene Symbol: Rbms3
Alias: 6720477E09Rik|8430436O14Rik
Full Name: RNA binding motif%2C single stranded interacting protein
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 1122852 bases
Position: chr9:118109913-119232764
Accession: 2444477
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0095302	RRM_1	PF00076.22	1.6e-32	1	2
MGP_CASTEiJ_P0095302	RRM_1	PF00076.22	1.6e-32	2	2
MGP_CASTEiJ_P0095299	RRM_1	PF00076.22	1.3e-31	1	2
MGP_CASTEiJ_P0095299	RRM_1	PF00076.22	1.3e-31	2	2
MGP_CASTEiJ_P0095297	RRM_1	PF00076.22	1.4e-31	1	2
MGP_CASTEiJ_P0095297	RRM_1	PF00076.22	1.4e-31	2	2
MGP_CASTEiJ_P0095294	RRM_1	PF00076.22	1.5e-31	1	2
MGP_CASTEiJ_P0095294	RRM_1	PF00076.22	1.5e-31	2	2
MGP_CASTEiJ_P0095298	RRM_1	PF00076.22	1.6e-31	1	2
MGP_CASTEiJ_P0095298	RRM_1	PF00076.22	1.6e-31	2	2
MGP_CASTEiJ_P0095293	RRM_1	PF00076.22	1.7e-31	1	2
MGP_CASTEiJ_P0095293	RRM_1	PF00076.22	1.7e-31	2	2
MGP_CASTEiJ_P0095296	RRM_1	PF00076.22	2.1e-31	1	2
MGP_CASTEiJ_P0095296	RRM_1	PF00076.22	2.1e-31	2	2
MGP_CASTEiJ_P0095300	RRM_1	PF00076.22	2.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0095293	-	7899	XM_017313248	MGP_CASTEiJ_P0095293	431 (aa)	XP_017168737	Q8BWL5
MGP_CASTEiJ_T0095296	-	2125	-	MGP_CASTEiJ_P0095296	463 (aa)	-	-
MGP_CASTEiJ_T0095297	-	2160	-	MGP_CASTEiJ_P0095297	402 (aa)	-	-
MGP_CASTEiJ_T0095294	-	3310	-	MGP_CASTEiJ_P0095294	414 (aa)	-	-
MGP_CASTEiJ_T0095295	-	1626	-	MGP_CASTEiJ_P0095295	185 (aa)	-	-
MGP_CASTEiJ_T0095298	-	2230	-	MGP_CASTEiJ_P0095298	415 (aa)	-	-
MGP_CASTEiJ_T0095299	-	1979	-	MGP_CASTEiJ_P0095299	386 (aa)	-	-
MGP_CASTEiJ_T0095304	-	1743	-	-	- (aa)	-	-
MGP_CASTEiJ_T0095300	-	585	-	MGP_CASTEiJ_P0095300	194 (aa)	-	-
MGP_CASTEiJ_T0095301	-	2022	-	-	- (aa)	-	-
MGP_CASTEiJ_T0095302	-	619	-	MGP_CASTEiJ_P0095302	206 (aa)	-	-
MGP_CASTEiJ_T0095303	-	1433	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0034390's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0034390's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0034390	Rbms3	83	37.222	MGP_CASTEiJ_G0027579	Elavl2	69	37.209
MGP_CASTEiJ_G0034390	Rbms3	76	39.474	MGP_CASTEiJ_G0026707	Celf3	91	39.474
MGP_CASTEiJ_G0034390	Rbms3	99	80.841	MGP_CASTEiJ_G0024960	Rbms1	96	71.538
MGP_CASTEiJ_G0034390	Rbms3	93	36.134	MGP_CASTEiJ_G0016890	Celf5	57	42.105
MGP_CASTEiJ_G0034390	Rbms3	77	30.818	MGP_CASTEiJ_G0026012	Pabpc1l	59	30.818
MGP_CASTEiJ_G0034390	Rbms3	82	42.105	MGP_CASTEiJ_G0033906	Celf6	52	42.105
MGP_CASTEiJ_G0034390	Rbms3	70	38.562	MGP_CASTEiJ_G0033478	Elavl3	63	37.931
MGP_CASTEiJ_G0034390	Rbms3	83	80.663	MGP_CASTEiJ_G0017172	Rbms2	86	66.758
MGP_CASTEiJ_G0034390	Rbms3	83	37.097	MGP_CASTEiJ_G0027708	Elavl4	70	36.458
MGP_CASTEiJ_G0034390	Rbms3	72	34.884	MGP_CASTEiJ_G0027214	-	57	34.884
MGP_CASTEiJ_G0034390	Rbms3	77	33.708	MGP_CASTEiJ_G0022384	Pabpc6	60	34.091
MGP_CASTEiJ_G0034390	Rbms3	75	37.079	MGP_CASTEiJ_G0024528	Celf2	77	39.474
MGP_CASTEiJ_G0034390	Rbms3	68	43.421	MGP_CASTEiJ_G0025323	Celf1	53	43.421
MGP_CASTEiJ_G0034390	Rbms3	72	40.789	MGP_CASTEiJ_G0023416	Celf4	68	40.789